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rrbs
•
reset
4
votes
5
replies
1.0k
views
edgeR for a mixture experiment
edgeR
model-selection
RRBS
mixture-experiment
3.1 years ago
ingerslev
• 0
0
votes
2
replies
863
views
MethylCC for RRBS data of Cord Blood
MethylCC
RRBS
cord blood
3.8 years ago
weichen-cls
• 0
0
votes
0
replies
754
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq
Methylation
DMP
DMR
RRBS
3.8 years ago
i.s.castanho
• 0
0
votes
1
reply
613
views
BiSeq - betaResults output only contains chr1 and chr2
biseq
betaRegression
RRBS
Methylation
4.1 years ago
i.s.castanho
• 0
5
votes
14
replies
2.1k
views
Odd P-value distribution in edgeR on RRBS data
edgeR
rrbs
updated 5.4 years ago by
Gordon Smyth
50k • written 5.4 years ago by
ingerslev
• 0
0
votes
4
replies
2.2k
views
MethylKit read in issue
methykit
rrbs
updated 6.0 years ago by
Mike Smith
★ 6.5k • written 6.0 years ago by
bekah
▴ 40
0
votes
3
replies
1.5k
views
scalability of edgeR on RRBS methylation data
edgeR
methyation
RRBS
updated 6.3 years ago by
Gordon Smyth
50k • written 6.3 years ago by
osa.zuta
▴ 40
0
votes
1
reply
1.1k
views
BiSeq - modelling options betaRegression
biseq
RRBS
betaregression
7.1 years ago
l.eijssen
• 0
1
vote
4
replies
1.8k
views
Using SVA with RRBS data
sva
RRBS
updated 7.2 years ago by
Jeff Leek
▴ 650 • written 7.2 years ago by
mrodrigues.fernanda
▴ 10
0
votes
3
replies
1.7k
views
SVA package for RRBS - bisulfite methylation data
rrbs
batch effect
methylation
sva
updated 7.6 years ago by
dashbrook1
• 0 • written 8.8 years ago by
GFM
▴ 20
4
votes
2
replies
1.4k
views
Bounded Regression with Limma for RRBS?
limma
rrbs
bsseq
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
nhejazi
• 0
0
votes
5
replies
2.0k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq
RRBS
SAAP-BS
coverage
9.1 years ago • updated 9.0 years ago
maria.maqueda
• 0
12 results • Page
1 of 1
Recent ...
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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