Bioconductor Rrbs

Showing : rrbs • reset

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818

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edgeR model-selection RRBS mixture-experiment

2.4 years ago ingerslev • 0

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650

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MethylCC RRBS cord blood

3.2 years ago weichen-cls • 0

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538

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Biseq Methylation DMP DMR RRBS

3.2 years ago i.s.castanho • 0

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441

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biseq betaRegression RRBS Methylation

3.5 years ago i.s.castanho • 0

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1.6k

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edgeR rrbs

updated 4.7 years ago by Gordon Smyth 48k • written 4.7 years ago by ingerslev • 0

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1.8k

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methykit rrbs

updated 5.4 years ago by Mike Smith ★ 6.1k • written 5.4 years ago by bekah ▴ 20

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1.2k

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edgeR methyation RRBS

updated 5.7 years ago by Gordon Smyth 48k • written 5.7 years ago by osa.zuta ▴ 40

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957

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biseq RRBS betaregression

6.5 years ago l.eijssen • 0

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1.6k

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sva RRBS

updated 6.5 years ago by Jeff Leek ▴ 640 • written 6.5 years ago by mrodrigues.fernanda ▴ 10

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1.6k

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rrbs batch effect methylation sva

updated 7.0 years ago by dashbrook1 • 0 • written 8.2 years ago by GFM ▴ 20

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1.2k

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limma rrbs bsseq

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by nhejazi • 0

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1.7k

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biseq RRBS SAAP-BS coverage

8.4 years ago maria.maqueda • 0

12 results • Page 1 of 1

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Comment: DMRcate design by James W. MacDonald 63k

That's what identical context means.

Comment: DMRcate design by Jitendra ▴ 10

Thanks James, but I did not understand it clearly. Could I used same Limma design matrix for DMRcate?

Comment: Steps needed to change design (relevel factors) in DESeq2 by jd774 • 0

Thanks for the example code, would the `"condition_1_vs_2"` and `"condition_2_vs_1"` giving same or different results on DEGs and normalize…

Answer: heatmap.2 - change column & row locations; angle / rotate by nehagoyal6397 • 0

Window 10 are comes with the new updates [how to fix connections to wireless displays in windows 10](http://fixwindows10connections.com) ju…

Comment: filtering out lowly expressed genes by groups by James W. MacDonald 63k

You might want to filter first though. ``` fun <- function(deseqobj, contvec, cutoff) { lildds <- dds[rowMeans(assays(deseqobj…