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rrbs
•
reset
4
votes
5
replies
818
views
edgeR for a mixture experiment
edgeR
model-selection
RRBS
mixture-experiment
2.4 years ago
ingerslev
• 0
0
votes
2
replies
650
views
MethylCC for RRBS data of Cord Blood
MethylCC
RRBS
cord blood
3.2 years ago
weichen-cls
• 0
0
votes
0
replies
538
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq
Methylation
DMP
DMR
RRBS
3.2 years ago
i.s.castanho
• 0
0
votes
1
reply
441
views
BiSeq - betaResults output only contains chr1 and chr2
biseq
betaRegression
RRBS
Methylation
3.5 years ago
i.s.castanho
• 0
5
votes
14
replies
1.6k
views
Odd P-value distribution in edgeR on RRBS data
edgeR
rrbs
updated 4.7 years ago by
Gordon Smyth
48k • written 4.7 years ago by
ingerslev
• 0
0
votes
4
replies
1.8k
views
MethylKit read in issue
methykit
rrbs
updated 5.4 years ago by
Mike Smith
★ 6.1k • written 5.4 years ago by
bekah
▴ 20
0
votes
3
replies
1.2k
views
scalability of edgeR on RRBS methylation data
edgeR
methyation
RRBS
updated 5.7 years ago by
Gordon Smyth
48k • written 5.7 years ago by
osa.zuta
▴ 40
0
votes
1
reply
957
views
BiSeq - modelling options betaRegression
biseq
RRBS
betaregression
6.5 years ago
l.eijssen
• 0
1
vote
4
replies
1.6k
views
Using SVA with RRBS data
sva
RRBS
updated 6.5 years ago by
Jeff Leek
▴ 640 • written 6.5 years ago by
mrodrigues.fernanda
▴ 10
0
votes
3
replies
1.6k
views
SVA package for RRBS - bisulfite methylation data
rrbs
batch effect
methylation
sva
updated 7.0 years ago by
dashbrook1
• 0 • written 8.2 years ago by
GFM
▴ 20
4
votes
2
replies
1.2k
views
Bounded Regression with Limma for RRBS?
limma
rrbs
bsseq
updated 7.3 years ago by
Aaron Lun
★ 28k • written 7.3 years ago by
nhejazi
• 0
0
votes
5
replies
1.7k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq
RRBS
SAAP-BS
coverage
8.4 years ago
maria.maqueda
• 0
12 results • Page
1 of 1
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Comment: DMRcate design
by
James W. MacDonald
63k
That's what identical context means.
Comment: DMRcate design
by
Jitendra
▴ 10
Thanks James, but I did not understand it clearly. Could I used same Limma design matrix for DMRcate?
Comment: Steps needed to change design (relevel factors) in DESeq2
by
jd774
• 0
Thanks for the example code, would the `"condition_1_vs_2"` and `"condition_2_vs_1"` giving same or different results on DEGs and normalize…
Answer: heatmap.2 - change column & row locations; angle / rotate
by
nehagoyal6397
• 0
Window 10 are comes with the new updates [how to fix connections to wireless displays in windows 10](http://fixwindows10connections.com) ju…
Comment: filtering out lowly expressed genes by groups
by
James W. MacDonald
63k
You might want to filter first though. ``` fun <- function(deseqobj, contvec, cutoff) { lildds <- dds[rowMeans(assays(deseqobj…
Votes
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
Comment: Timely differentially expressed genes
Comment: NPARC package y-variable
Comment: List of Deprecated Packages for Bioc3.18
Answer: Manual creation of qPCRset does not work
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