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ERROR happens when install "DSS" package
methylationArrayAnalysis
ChAMP
DMP
DSS
7 days ago • updated 6 days ago
16301050225
• 0
0
votes
0
replies
241
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Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq
Methylation
DMP
DMR
RRBS
22 months ago
i.s.castanho
• 0
1
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7
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2.0k
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dmpFinder return value (minfi)
minfi
dmpfinder
dmp
illuminahumanmethylationepicanno.ilmn10b.hg19
epic microarray
updated 5.9 years ago by
James W. MacDonald
59k • written 5.9 years ago by
Biologist
▴ 90
3 results • Page
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Answer: ashr vs apeglm for interaction data
by
Michael Love
36k
Can you show the MA plot for these two analyses? Also for a gene with a large LFC from ashr, can you show plotCounts?
Comment: Robust Multi-array Average could get negative value or not?
by
Yang Shi
• 0
Got the point sir~ Thanks so much!
Comment: Robust Multi-array Average could get negative value or not?
by
James W. MacDonald
59k
Because it's a small number.
Comment: Robust Multi-array Average could get negative value or not?
by
Yang Shi
• 0
Thanks for your quick reply sir! Could you tell me why 4 which you selected here?
Answer: Robust Multi-array Average could get negative value or not?
by
James W. MacDonald
59k
After running RMA, your data have been logged, base 2. Any value < 1 will have a negative value. Looking at the data from that GEO submissi…
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Answer: Robust Multi-array Average could get negative value or not?
Answer: Robust Multi-array Average could get negative value or not?
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
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