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CRISPRseek: searchHits() optimization
Preprocessing BSgenome safe BSgenome CRISPRseek Preprocessing BSgenome safe BSgenome
10.1 years ago Julie Zhu ★ 4.3k
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2
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Aha: different error may be a clue: RE: separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome with MEDIPS
Alignment BSgenome safe BSgenome MEDIPS Alignment BSgenome safe BSgenome MEDIPS
updated 10.8 years ago by ▴ 570 • written 10.8 years ago by ▴ 220
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6
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separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome with MEDIPS
Alignment BSgenome safe BSgenome MEDIPS Alignment BSgenome safe BSgenome MEDIPS
updated 10.8 years ago by ▴ 570 • written 10.8 years ago by ▴ 220
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GWASTools suggestions: explicit interface for GenotypeReaders,
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updated 10.8 years ago by ▴ 870 • written 10.8 years ago by ▴ 70
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SAM for protemics - low q values
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11.0 years ago Hendrik Nolte ▴ 10
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4
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DEXSeq on two-exon genes: how to specify a formula without redundant terms
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11.4 years ago • updated 11.3 years ago Narayanan, Manikandan NIH/NIAID [E] ▴ 60
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BitSeq: Required input for 3' bias correction on transcripts.
Transcription RNASeq safe BitSeq Transcription RNASeq safe BitSeq
11.6 years ago Peter Glaus ▴ 70
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Log transformation and left censoring
limma safe edgeR limma safe edgeR
11.6 years ago Paul Harrison ▴ 100
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BitSeq: Required input for 3' bias correction on transcripts.
RNASeq safe BitSeq RNASeq safe BitSeq
11.6 years ago Dave Gerrard ▴ 40
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2
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frma for Nimblegen arrays?
Microarray Annotation Normalization affy PROcess safe frma frmaTools Microarray affy
updated 11.9 years ago by ★ 4.3k • written 11.9 years ago by ▴ 260
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SCAN UPC probability - validation of gene expression results using UPC
hgu133a2 safe SCAN.UPC hgu133a2 safe SCAN.UPC
updated 11.9 years ago by ▴ 600 • written 11.9 years ago by ▴ 850
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SCAN UPC probability - validation of gene expression results using UPC
hgu133a2 safe hgu133a2 safe
11.9 years ago Guest User ★ 13k
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5
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frma for Nimblegen arrays?
Microarray Normalization affy PROcess safe frma Microarray Normalization affy PROcess
updated 11.9 years ago by ▴ 830 • written 11.9 years ago by ▴ 260
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flowCore 1.22.0 broken for some FCS files
Cancer safe flowCore Cancer safe flowCore
12.3 years ago Josef Spidlen ▴ 140
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0
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dbSNP strand information
SNPlocs safe SNPlocs safe
12.6 years ago Alex Gutteridge ▴ 650
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3
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1.6k
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Strand information for dbSNP packages
SNPlocs safe SNPlocs safe
updated 12.6 years ago by ★ 6.8k • written 12.6 years ago by ▴ 650
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Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
safe BiocInstaller safe BiocInstaller
12.8 years ago Firas Swidan ▴ 50
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Fwd: Re: Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
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12.8 years ago Andrea Grilli ▴ 240
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Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
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updated 12.8 years ago by ★ 8.2k • written 12.8 years ago by ▴ 50
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Can't reproduce assessment data included in affycomp package
Cancer affy affycomp PROcess safe Cancer affy affycomp PROcess safe
updated 13.2 years ago by ▴ 590 • written 13.2 years ago by ★ 2.3k
0
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5
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1.7k
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Combining data from different versions of Illumina HumanHT-12 v3
Normalization probe limma safe ArrayExpress Normalization probe limma safe ArrayExpress
updated 13.4 years ago by ★ 3.6k • written 13.4 years ago by ▴ 220
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0
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1.1k
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Can't reproduce assessment data included in affycomp package
Cancer affy affycomp PROcess safe Cancer affy affycomp PROcess safe
13.4 years ago Harris A. Jaffee ▴ 590
0
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0
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959
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Can't reproduce assessment data included in affycomp package
Cancer affycomp PROcess safe Cancer affycomp PROcess safe
13.4 years ago Philippe Serhal ▴ 10
0
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1
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1.7k
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Combining data from different versions of Illumina HumanHT-12 v3
Normalization probe safe ArrayExpress Normalization probe safe ArrayExpress
updated 13.4 years ago by ★ 3.6k • written 13.4 years ago by ▴ 220
0
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4
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4.7k
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Bioconductor with Affymetrix Mouse Gene 1.0 ST
Annotation cdf PROcess safe Annotation cdf PROcess safe
13.5 years ago M. Emily Merrill ▴ 20
0
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3
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1.2k
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Package xps - Problem accessing README file
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updated 13.8 years ago by ★ 3.9k • written 13.8 years ago by ★ 8.2k
0
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0
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734
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Now you can smoke anywhere you want!
Cancer safe Cancer safe
15.0 years ago inLife E-Cigarettes ▴ 10
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723
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You Don't Have to Quit Smoking. New Technology!
Cancer safe Cancer safe
15.1 years ago inLife E-Cigarettes ▴ 10
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0
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834
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biomaRt - current devel version of biomaRt+RCurl don't work
biomaRt safe biomaRt safe
15.3 years ago Patrick Aboyoun ★ 1.6k
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0
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
Cancer RdbiPgSQL safe Cancer RdbiPgSQL safe
15.4 years ago Ben Madin ▴ 20
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2
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1.0k
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
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updated 15.4 years ago by 16k • written 15.4 years ago by ▴ 20
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0
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723
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!SPAM: Sale Offer:- ViagraCializ Pills at LowestPrices on net! $1.31/tab, find out more ewlelk 6qu
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15.8 years ago Anisa Gracie ▴ 10
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1
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2.0k
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Important information (Discover The Ways That We Protect Your Online Access)
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16.3 years ago �2008 HALIFAX SECURITY ▴ 20
0
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4
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1.6k
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About beadarray normaliseIllumina() warning messages
Normalization GO safe beadarray lumi Normalization GO safe beadarray lumi
updated 16.7 years ago by ▴ 410 • written 16.7 years ago by ▴ 150
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1
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1.4k
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[R] Why SAM has totally diffent results in R2.1.1 and R2.4.0
Microarray Genetics Survival multtest siggenes safe Microarray Genetics Survival multtest
updated 17.8 years ago by ▴ 900 • written 17.8 years ago by 25k
0
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2
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1.8k
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BH vs BY in p.adjust
Coverage limma safe Coverage limma safe
updated 18.2 years ago by ★ 13k • written 18.2 years ago by ▴ 50
0
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5
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1.5k
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Missing chromosomal locations in hgu133a package
hgu133a AnnBuilder safe hgu133a AnnBuilder safe
updated 18.2 years ago by ▴ 870 • written 18.2 years ago by ▴ 60
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1
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1.1k
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limma 3-way interaction
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18.4 years ago Jacob Michaelson ▴ 320
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6
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1.2k
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Limma: background correction. Use or ignore?
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updated 18.5 years ago by ★ 2.4k • written 18.5 years ago by ★ 1.9k
0
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2
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1.3k
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GeneSpring can call R functions?
GO GeneSpring safe GO GeneSpring safe
updated 19.4 years ago by ★ 1.1k • written 19.4 years ago by ▴ 250
0
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2
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1.2k
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trouble with yeastann function in AnnBuilder
Annotation Yeast probe AnnBuilder safe Annotation Yeast probe AnnBuilder safe
updated 19.6 years ago by ▴ 10 • written 19.6 years ago by ▴ 320
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2
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1.4k
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Bioconductor data sets - Unigene IDs
probe safe probe safe
updated 22.0 years ago by ★ 2.3k • written 22.0 years ago by ★ 13k
42 results • Page 1 of 1
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Comment: Question on performing ANOVA-like analysis using limma by Gordon Smyth 51k
What does `sampleid` represent? If you use duplicateCorrelation(), then the blocking factor should be subject, it isn't clear from your que…
Answer: Question on performing ANOVA-like analysis using limma by Gordon Smyth 51k
In time course experiments such as this, it is essential to account for baseline variability between subjects, so the second analysis given…
Comment: AffylmGUI does not start wit R 4.4.1 by Gordon Smyth 51k
Glad to hear that you have figured it out. Your experience might help other people with limmaGUI or affylmGUI on MacOS as well.
Answer: rtracklayer accessing UCSC data table not working by James W. MacDonald 67k
The track argument is deprecated now, so you can omit it. ``` > tbl.rmsk <- getTable(ucscTableQuery(mySession, table = "rmsk", range = …
Answer: For feline genome by James W. MacDonald 67k
This support site is meant to help people with specific questions about using Bioconductor software. There is a [vignette for `ROntoTools`]…
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Comment: AffylmGUI does not start wit R 4.4.1
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
Comment: Error in GOmeth function of missMethyl when EPICv2 annotation is used
Answer: unable to access Annotationhub latest record
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