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Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
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updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 50
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Limma: background correction. Use or ignore?
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updated 18.1 years ago by ★ 2.4k • written 18.1 years ago by ★ 1.9k
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separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome with MEDIPS
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updated 10.4 years ago by ▴ 570 • written 10.4 years ago by ▴ 220
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frma for Nimblegen arrays?
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updated 11.6 years ago by ▴ 830 • written 11.6 years ago by ▴ 260
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Missing chromosomal locations in hgu133a package
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updated 17.8 years ago by ▴ 870 • written 17.9 years ago by ▴ 60
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Combining data from different versions of Illumina HumanHT-12 v3
Normalization probe limma safe ArrayExpress Normalization probe limma safe ArrayExpress
updated 13.0 years ago by ★ 3.6k • written 13.0 years ago by ▴ 220
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4
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DEXSeq on two-exon genes: how to specify a formula without redundant terms
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11.0 years ago Narayanan, Manikandan NIH/NIAID [E] ▴ 60
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Bioconductor with Affymetrix Mouse Gene 1.0 ST
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13.2 years ago M. Emily Merrill ▴ 20
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About beadarray normaliseIllumina() warning messages
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updated 16.4 years ago by ▴ 410 • written 16.4 years ago by ▴ 150
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Package xps - Problem accessing README file
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updated 13.5 years ago by ★ 3.9k • written 13.5 years ago by ★ 8.2k
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Strand information for dbSNP packages
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updated 12.2 years ago by ★ 6.8k • written 12.2 years ago by ▴ 650
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trouble with yeastann function in AnnBuilder
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updated 19.3 years ago by ▴ 10 • written 19.3 years ago by ▴ 320
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Bioconductor data sets - Unigene IDs
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updated 21.6 years ago by ★ 2.3k • written 21.6 years ago by ★ 13k
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Aha: different error may be a clue: RE: separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome with MEDIPS
Alignment BSgenome safe BSgenome MEDIPS Alignment BSgenome safe BSgenome MEDIPS
updated 10.4 years ago by ▴ 570 • written 10.4 years ago by ▴ 220
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2
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1.5k
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frma for Nimblegen arrays?
Microarray Annotation Normalization affy PROcess safe frma frmaTools Microarray affy
updated 11.5 years ago by ★ 4.3k • written 11.5 years ago by ▴ 260
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2
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1.7k
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BH vs BY in p.adjust
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updated 17.8 years ago by ★ 13k • written 17.8 years ago by ▴ 50
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2
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915
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
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updated 15.1 years ago by 16k • written 15.1 years ago by ▴ 20
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2
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GeneSpring can call R functions?
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updated 19.0 years ago by ★ 1.1k • written 19.0 years ago by ▴ 250
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Can't reproduce assessment data included in affycomp package
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updated 12.9 years ago by ▴ 590 • written 12.9 years ago by ★ 2.3k
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Important information (Discover The Ways That We Protect Your Online Access)
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15.9 years ago �2008 HALIFAX SECURITY ▴ 20
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1
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1.4k
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SCAN UPC probability - validation of gene expression results using UPC
hgu133a2 safe SCAN.UPC hgu133a2 safe SCAN.UPC
updated 11.5 years ago by ▴ 590 • written 11.5 years ago by ▴ 850
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1
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limma 3-way interaction
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18.0 years ago Jacob Michaelson ▴ 320
0
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1
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964
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GWASTools suggestions: explicit interface for GenotypeReaders,
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updated 10.4 years ago by ▴ 870 • written 10.4 years ago by ▴ 70
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1
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[R] Why SAM has totally diffent results in R2.1.1 and R2.4.0
Microarray Genetics Survival multtest siggenes safe Microarray Genetics Survival multtest
updated 17.5 years ago by ▴ 900 • written 17.5 years ago by 25k
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1.5k
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Combining data from different versions of Illumina HumanHT-12 v3
Normalization probe safe ArrayExpress Normalization probe safe ArrayExpress
updated 13.1 years ago by ★ 3.6k • written 13.1 years ago by ▴ 220
0
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0
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1.1k
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CRISPRseek: searchHits() optimization
Preprocessing BSgenome safe BSgenome CRISPRseek Preprocessing BSgenome safe BSgenome
9.8 years ago Julie Zhu ★ 4.3k
0
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0
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1.3k
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Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
safe BiocInstaller safe BiocInstaller
12.4 years ago Firas Swidan ▴ 50
0
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0
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662
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!SPAM: Sale Offer:- ViagraCializ Pills at LowestPrices on net! $1.31/tab, find out more ewlelk 6qu
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15.5 years ago Anisa Gracie ▴ 10
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0
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
Cancer RdbiPgSQL safe Cancer RdbiPgSQL safe
15.0 years ago Ben Madin ▴ 20
0
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0
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785
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biomaRt - current devel version of biomaRt+RCurl don't work
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15.0 years ago Patrick Aboyoun ★ 1.6k
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0
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665
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You Don't Have to Quit Smoking. New Technology!
Cancer safe Cancer safe
14.7 years ago inLife E-Cigarettes ▴ 10
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0
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674
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Now you can smoke anywhere you want!
Cancer safe Cancer safe
14.7 years ago inLife E-Cigarettes ▴ 10
0
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0
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1.1k
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flowCore 1.22.0 broken for some FCS files
Cancer safe flowCore Cancer safe flowCore
11.9 years ago Josef Spidlen ▴ 140
0
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0
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882
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Can't reproduce assessment data included in affycomp package
Cancer affycomp PROcess safe Cancer affycomp PROcess safe
13.1 years ago Philippe Serhal ▴ 10
0
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0
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1.0k
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Can't reproduce assessment data included in affycomp package
Cancer affy affycomp PROcess safe Cancer affy affycomp PROcess safe
13.1 years ago Harris A. Jaffee ▴ 590
0
votes
0
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943
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Fwd: Re: Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
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12.5 years ago Andrea Grilli ▴ 240
0
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0
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1.2k
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dbSNP strand information
SNPlocs safe SNPlocs safe
12.2 years ago Alex Gutteridge ▴ 650
0
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0
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894
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SCAN UPC probability - validation of gene expression results using UPC
hgu133a2 safe hgu133a2 safe
11.5 years ago Guest User ★ 13k
0
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0
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1.0k
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BitSeq: Required input for 3' bias correction on transcripts.
RNASeq safe BitSeq RNASeq safe BitSeq
11.3 years ago Dave Gerrard ▴ 40
0
votes
0
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925
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Log transformation and left censoring
limma safe edgeR limma safe edgeR
11.3 years ago Paul Harrison ▴ 100
0
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0
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1.1k
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BitSeq: Required input for 3' bias correction on transcripts.
Transcription RNASeq safe BitSeq Transcription RNASeq safe BitSeq
11.3 years ago Peter Glaus ▴ 70
0
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0
replies
926
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SAM for protemics - low q values
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10.7 years ago Hendrik Nolte ▴ 10
42 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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