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[R] Why SAM has totally diffent results in R2.1.1 and R2.4.0
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updated 17.5 years ago by ▴ 900 • written 17.5 years ago by 25k
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Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
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12.4 years ago Firas Swidan ▴ 50
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Bioconductor data sets - Unigene IDs
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updated 21.6 years ago by ★ 2.3k • written 21.6 years ago by ★ 13k
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trouble with yeastann function in AnnBuilder
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updated 19.3 years ago by ▴ 10 • written 19.3 years ago by ▴ 320
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GeneSpring can call R functions?
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updated 19.0 years ago by ★ 1.1k • written 19.0 years ago by ▴ 250
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Limma: background correction. Use or ignore?
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updated 18.1 years ago by ★ 2.4k • written 18.1 years ago by ★ 1.9k
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limma 3-way interaction
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18.0 years ago Jacob Michaelson ▴ 320
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Missing chromosomal locations in hgu133a package
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updated 17.8 years ago by ▴ 870 • written 17.8 years ago by ▴ 60
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BH vs BY in p.adjust
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updated 17.8 years ago by ★ 13k • written 17.8 years ago by ▴ 50
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About beadarray normaliseIllumina() warning messages
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updated 16.3 years ago by ▴ 410 • written 16.3 years ago by ▴ 150
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Important information (Discover The Ways That We Protect Your Online Access)
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15.9 years ago �2008 HALIFAX SECURITY ▴ 20
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!SPAM: Sale Offer:- ViagraCializ Pills at LowestPrices on net! $1.31/tab, find out more ewlelk 6qu
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15.4 years ago Anisa Gracie ▴ 10
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
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updated 15.0 years ago by 16k • written 15.0 years ago by ▴ 20
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
Cancer RdbiPgSQL safe Cancer RdbiPgSQL safe
15.0 years ago Ben Madin ▴ 20
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biomaRt - current devel version of biomaRt+RCurl don't work
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14.9 years ago Patrick Aboyoun ★ 1.6k
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You Don't Have to Quit Smoking. New Technology!
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14.7 years ago inLife E-Cigarettes ▴ 10
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Now you can smoke anywhere you want!
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14.7 years ago inLife E-Cigarettes ▴ 10
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flowCore 1.22.0 broken for some FCS files
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11.9 years ago Josef Spidlen ▴ 140
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Package xps - Problem accessing README file
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updated 13.5 years ago by ★ 3.9k • written 13.5 years ago by ★ 8.2k
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Bioconductor with Affymetrix Mouse Gene 1.0 ST
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13.1 years ago M. Emily Merrill ▴ 20
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Combining data from different versions of Illumina HumanHT-12 v3
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updated 13.1 years ago by ★ 3.6k • written 13.1 years ago by ▴ 220
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Can't reproduce assessment data included in affycomp package
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13.1 years ago Philippe Serhal ▴ 10
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Can't reproduce assessment data included in affycomp package
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13.1 years ago Harris A. Jaffee ▴ 590
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5
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Combining data from different versions of Illumina HumanHT-12 v3
Normalization probe limma safe ArrayExpress Normalization probe limma safe ArrayExpress
updated 13.0 years ago by ★ 3.6k • written 13.0 years ago by ▴ 220
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Can't reproduce assessment data included in affycomp package
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updated 12.8 years ago by ▴ 590 • written 12.8 years ago by ★ 2.3k
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7
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Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
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updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 50
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Fwd: Re: Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
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12.4 years ago Andrea Grilli ▴ 240
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Strand information for dbSNP packages
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updated 12.2 years ago by ★ 6.8k • written 12.2 years ago by ▴ 650
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dbSNP strand information
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12.2 years ago Alex Gutteridge ▴ 650
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frma for Nimblegen arrays?
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updated 11.5 years ago by ▴ 830 • written 11.5 years ago by ▴ 260
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SCAN UPC probability - validation of gene expression results using UPC
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updated 11.5 years ago by ▴ 590 • written 11.5 years ago by ▴ 850
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SCAN UPC probability - validation of gene expression results using UPC
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11.5 years ago Guest User ★ 13k
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2
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frma for Nimblegen arrays?
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updated 11.5 years ago by ★ 4.3k • written 11.5 years ago by ▴ 260
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BitSeq: Required input for 3' bias correction on transcripts.
RNASeq safe BitSeq RNASeq safe BitSeq
11.3 years ago Dave Gerrard ▴ 40
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923
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Log transformation and left censoring
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11.3 years ago Paul Harrison ▴ 100
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BitSeq: Required input for 3' bias correction on transcripts.
Transcription RNASeq safe BitSeq Transcription RNASeq safe BitSeq
11.3 years ago Peter Glaus ▴ 70
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4
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1.4k
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DEXSeq on two-exon genes: how to specify a formula without redundant terms
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11.0 years ago Narayanan, Manikandan NIH/NIAID [E] ▴ 60
0
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0
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925
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SAM for protemics - low q values
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10.6 years ago Hendrik Nolte ▴ 10
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2
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1.5k
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Aha: different error may be a clue: RE: separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome with MEDIPS
Alignment BSgenome safe BSgenome MEDIPS Alignment BSgenome safe BSgenome MEDIPS
updated 10.4 years ago by ▴ 570 • written 10.4 years ago by ▴ 220
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GWASTools suggestions: explicit interface for GenotypeReaders,
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updated 10.4 years ago by ▴ 870 • written 10.4 years ago by ▴ 70
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6
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1.7k
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separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome with MEDIPS
Alignment BSgenome safe BSgenome MEDIPS Alignment BSgenome safe BSgenome MEDIPS
updated 10.4 years ago by ▴ 570 • written 10.4 years ago by ▴ 220
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CRISPRseek: searchHits() optimization
Preprocessing BSgenome safe BSgenome CRISPRseek Preprocessing BSgenome safe BSgenome
9.8 years ago Julie Zhu ★ 4.3k
42 results • Page 1 of 1
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Answer: How to save the DEXSeq results by Michael Love 41k
If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…
Answer: Method to find pathways different between 2 groups by Robert Castelo ★ 3.3k
Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …
Answer: Couldn't connect to server while using "pathways" by James W. MacDonald 65k
As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…
Answer: Trim/Filter out-of-bounds GRanges by Michael Love 41k
https://support.bioconductor.org/p/73432/#73448
Comment: Couldn't connect to server while using "pathways" by Michael Love 41k
You've put the tag "DESeq2" which results in an email to the maintainer, me, that I should respond to a post on the support site. Can you …
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
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