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santa
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limma technical replicates and biological replicates in same design
limma
SANTA
14.6 years ago • updated 4.9 years ago
Gordon Smyth
50k
0
votes
1
reply
1.2k
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
updated 4.9 years ago by
Gordon Smyth
50k • written 14.6 years ago by
Marcelo Laia
▴ 450
0
votes
0
replies
1.2k
views
FOSBE 2012
SANTA
SANTA
12.0 years ago
mabawsa
▴ 20
0
votes
5
replies
1.2k
views
Selected probes from a given probeset
Microarray
SANTA
Microarray
SANTA
12.0 years ago
Ramiro Rodríguez
▴ 30
0
votes
0
replies
1.3k
views
Bioinformatics course - October 2011 Registration is now open
Microarray
Cancer
biomaRt
ArrayExpress
genomes
SANTA
Microarray
Cancer
biomaRt
genomes
12.6 years ago
Claude Chelala
▴ 40
0
votes
0
replies
1.4k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq
ChIPSeq
Epigenetics
Cancer
chipseq
SANTA
RNASeq
ChIPSeq
Epigenetics
Cancer
SANTA
12.7 years ago
stefano iacus
▴ 430
0
votes
1
reply
1.2k
views
question on makeTranscriptDbFromUCSC
Cancer
rtracklayer
GenomicRanges
PING
SANTA
Cancer
rtracklayer
GenomicRanges
PING
SANTA
updated 13.9 years ago by
Ping Ma
▴ 10 • written 13.9 years ago by
Hervé Pagès
16k
0
votes
0
replies
870
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
14.6 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
864
views
Bioconductor Digest, Vol 79, Issue 20
Annotation
limma
SANTA
Annotation
limma
SANTA
14.6 years ago
Gordon Smyth
50k
0
votes
0
replies
810
views
OFF TOPIC high-density SSU rRNA microarray
Microarray
SANTA
Microarray
SANTA
14.6 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
928
views
[limma] Possible bug on read.maimages function ?
Annotation
limma
SANTA
Annotation
limma
SANTA
14.6 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
1.2k
views
help needed on avereps function
Normalization
probe
limma
SANTA
Normalization
probe
limma
SANTA
updated 14.9 years ago by
Erika Melissari
▴ 250 • written 14.9 years ago by
Francois Pepin
★ 1.3k
0
votes
0
replies
1.4k
views
limma Time Course Experiments question
graph
limma
SANTA
graph
limma
SANTA
15.1 years ago
Marcelo Laia
▴ 450
0
votes
5
replies
1.8k
views
Expressionset from ArrayExpress processed data
ArrayExpress
SANTA
ArrayExpress
SANTA
updated 15.3 years ago by
Martin Morgan
25k • written 15.3 years ago by
Yovanny Izquierdo Núñez
▴ 20
0
votes
0
replies
1.0k
views
Job: Statistical Analyst - Affymetrix, Inc.
Microarray
Genetics
Classification
SANTA
Microarray
Genetics
Classification
SANTA
19.1 years ago
Higgs, Debi
▴ 10
0
votes
4
replies
1.3k
views
Affymetrix file parsers released under LGPL open source license
SANTA
SANTA
updated 19.4 years ago by
Harry Mangalam
▴ 60 • written 19.4 years ago by
Lelivelt, Mike
▴ 50
0
votes
1
reply
1.1k
views
PLIER is available as open source
plier
SANTA
plier
SANTA
updated 19.6 years ago by
Francois Collin
▴ 50 • written 19.6 years ago by
Lelivelt, Mike
▴ 50
0
votes
0
replies
970
views
Affymetrix Postdoctoral Opportunity
Microarray
SANTA
Microarray
SANTA
20.4 years ago
VanLieu, Connie
▴ 10
18 results • Page
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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tangming2005
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junhui.li11
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James W. MacDonald
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