Bioconductor Scran

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161

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scran BiocParallel bluster

12 days ago • updated 11 days ago ATpoint ★ 4.1k

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238

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scran bluster scater scuttle

updated 6 weeks ago by ATpoint ★ 4.1k • written 6 weeks ago by Dario Strbenac ★ 1.5k

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445

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BiocParallel scran

updated 3 months ago by ATpoint ★ 4.1k • written 3 months ago by qwang178 • 0

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815

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scRNAseq quickcluster scRNA scran

5 months ago ruba-mahmoud • 0

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359

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scran

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by Maximilian • 0

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829

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scran SingleCellExperiment

10 months ago Lluís Revilla Sancho ▴ 730

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5.5k

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scoreMarkers scran

updated 10 months ago by Peter Hickey ▴ 740 • written 10 months ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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smart-seq2 scRNAseq scran

11 months ago • updated 10 months ago Lluís Revilla Sancho ▴ 730

8 results • Page 1 of 1

Recent ...

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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k

Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Votes

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

Awards • All

Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k