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smart-seq2 scRNAseq scran

11 months ago • updated 10 months ago Lluís Revilla Sancho ▴ 730

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432

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BiocParallel scran

updated 3 months ago by ATpoint ★ 4.1k • written 3 months ago by qwang178 • 0

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scoreMarkers scran

updated 10 months ago by Peter Hickey ▴ 740 • written 10 months ago by Assa Yeroslaviz ★ 1.5k

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scRNAseq quickcluster scRNA scran

4 months ago ruba-mahmoud • 0

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821

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scran SingleCellExperiment

10 months ago Lluís Revilla Sancho ▴ 730

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142

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scran BiocParallel bluster

8 days ago • updated 7 days ago ATpoint ★ 4.1k

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231

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scran bluster scater scuttle

updated 5 weeks ago by ATpoint ★ 4.1k • written 5 weeks ago by Dario Strbenac ★ 1.5k

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355

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scran

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by Maximilian • 0

8 results • Page 1 of 1

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Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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