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scran scater scuttle

updated 2.6 years ago by Aaron Lun ★ 28k • written 2.6 years ago by enricoferrero ▴ 660

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scran SingleCellExperiment scuttle scater

updated 2.2 years ago by Aaron Lun ★ 28k • written 2.2 years ago by enricoferrero ▴ 660

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944

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scater SingleCellExperiment BiocParallel scuttle scran

17 months ago enricoferrero ▴ 660

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548

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normalizeCounts scran librarySizeFactors scuttle scRNAseq

13 months ago behr201 • 0

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184

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scuttle scater seurat SpatialExperiment

7 weeks ago cathalgking ▴ 10

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141

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scuttle scater SpatialExperiment

updated 8 weeks ago by alan.ocallaghan ▴ 120 • written 11 weeks ago by cathalgking ▴ 10

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Answer: *** caught segfault *** , cause 'memory not mapped' by James W. MacDonald 62k

You are unfortunately running out of RAM. As you note, you could possibly use `frma`, after generating frozen vectors using the `frmaTools`…

Comment: Help with Error in DiffBind by Chris • 0

Thanks Rory! result <- dba(samples) Error in if ((length(callers) == 1) & (callers[1] == "counts")) { : argument is of len…

Answer: Help with Error in DiffBind by Rory Stark ★ 4.7k

In your case, with only two replicates in each sample group, you can not perform a default analysis using only `dba.analyze()`. I suggest t…

Comment: Help with Error in DiffBind by Rory Stark ★ 4.7k

Looks like you should either delete the file > /labs/PI/atacseq_output_03172023/bwa/merged_library/DISEASED_REP2.mLb.clN.sorted.bam.bai …

Comment: How to getting synonymous SNPs from BiomaRt before timing out? by James W. MacDonald 62k

``` > options(timeout = 1e6) > z <- getBM(snp_attributes, c("ensembl_gene","so_mini_parent_name"), list("ENSG00000138376", "synonymous_vari…

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WGCNA: Module preservation vs consensus analysis

Answer: Help with Error in DiffBind

Comment: Help with Error in DiffBind

Comment: how can I do gene differential analysis on data after vst

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Supporter to linouhao ▴ 20