Bioconductor Seqlevels

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1.5k

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txdb threeutrsbytranscript seqlevelsstyle seqlevels

9.0 years ago • updated 8.9 years ago Robert K. Bradley ▴ 40

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7.9k

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granges seqlevels

9.4 years ago Hermann Norpois ▴ 170

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1.6k

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txdb.hsapiens.ucsc.hg19.knowngene seqlevels bugs

updated 7.7 years ago by Hervé Pagès 16k • written 7.7 years ago by wcstcyx ▴ 30

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2.6k

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granges seqlevels feature request

updated 2.3 years ago by story.benjamin ▴ 20 • written 7.3 years ago by Charles Plessy ▴ 180

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1.9k

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variantannotation seqlevels error

updated 10.0 years ago by Valerie Obenchain ★ 6.8k • written 10.0 years ago by Asma rabe ▴ 290

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Comment: ensemblVEP deprecation and how to reproduce by Vincent J. Carey, Jr. 6.7k

What aspect of ensemblVEP are you looking for? The vignette https://bioconductor.org/packages/release/bioc/vignettes/VariantAnnotation/in…

Answer: Help with design matrix for RNA-seq data using edgeR by Gordon Smyth 51k

This forum is intended to help with software usage and syntax rather than to answer research questions, and your question is a definitely a…

Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k

DESeq2 has a way of fixing the reference pseudo-sample used for normalization. In estimateSizeFactors man page, you will see an argument g…

Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k

Sorry - I requested this to be posted here, I will answer.

Answer: tximport data import by Michael Love 42k

Reminder that tximeta exists -- if you are working with mouse or human data and using Ensembl or GENCODE (or RefSeq, but not "latest" which…

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Answer: Should tSNE from biol. replicates look alike?

Comment: fgsea stuck in an infinite loop in the middle of the run

Answer: Empty Results from champ.DMP Despite Expected Output

Answer: How to use compareCluster in ClusterProfiler?

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Scholar to James W. MacDonald 67k

Popular Question to Matthew Thornton ▴ 380