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seqlogo
•
reset
1
vote
4
replies
1.2k
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Error of PWM not colsum to 1 from package DiffLogo or seqLogo
seqLogo
DiffLogo
2.3 years ago
zhxiaokang
▴ 20
0
votes
1
reply
1.4k
views
PWM with columns that add up to 1
biostrings
seqlogo
pwm
updated 8.1 years ago by
Marcel Ramos
700 • written 8.1 years ago by
clausdkuhn
• 0
0
votes
5
replies
1.9k
views
Plotting protein position weighted matrices in seqLogo and DiffLogo
seqlogo
DiffLogo
updated 8.3 years ago by
mgledi
• 0 • written 8.4 years ago by
jeffb
• 0
0
votes
0
replies
899
views
Change chars ACGT to ACGU in seqLogo
seqLogo
seqLogo
11.0 years ago
Fabrice Tourre
▴ 970
0
votes
0
replies
927
views
cosmo for particular sequences
seqLogo
seqLogo
12.2 years ago
Guest User
★ 13k
0
votes
0
replies
1.4k
views
seqLogo package: sequence logo graph with background frequency?
seqLogo
seqLogo
13.0 years ago
Tim Smith
★ 1.1k
3
votes
3
replies
2.8k
views
Drawing multiple sequence logos with seqLogo?
graph
seqLogo
graph
seqLogo
14.3 years ago
Nenad Bartonicek
▴ 80
7 results • Page
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Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS
by
Aidan
▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
by
Michael Love
43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
xiaofeiwang198266
• 0
Thanks for your reply!
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Hervé Pagès
16k
> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb) Yes, that's the right course of action. `seqlev…
Comment: ISO a solution to rank-order introns by transcript
by
mat149
▴ 80
Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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