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News:
Course Manipulation of NGS Data for Genomic and Population Genetics Analyses
sequencing
Sequencing
SequencingData
22 months ago
communication
• 0
1
vote
1
reply
1.4k
views
Library sizes of miRNA sequencing data and TMM normalization with Edge-R
edgeR
SequencingData
miRNA
TMM
Normalization
updated 3.0 years ago by
Gordon Smyth
53k • written 3.0 years ago by
tleona3
• 0
0
votes
0
replies
1.0k
views
Analysis of TIF-seq data to generate transcription start sites (TSS) and poly(A) site (PAS) clusters
Transcriptomics
SequencingData
3.2 years ago
Rom
• 0
0
votes
2
replies
1.2k
views
R/Bioconductor package for Circulating Cell-Free DNA data analysis
SequencingData
4.3 years ago
adR
▴ 40
0
votes
3
replies
1.9k
views
package for ATACseq data analysis
SequencingData
ATACSeq
ATACseqQC
updated 3.5 years ago by
Rory Stark
★ 5.3k • written 4.4 years ago by
adR
▴ 40
0
votes
0
replies
1.1k
views
Do you know a sofware to draw pedigrees + haplotypes?
SequencingData
STR
MutationalPatterns
pedigree
HapMap
4.5 years ago
Negar
• 0
6 results • Page
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Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
by
a2a2ddrhaa
• 0
For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…
Answer: Subsetting data verses contrasts [DESeq2]?
by
ATpoint
★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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