Bioconductor Log2fc

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1.9k

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fgsea log2FC

10 months ago V_Vibes • 0

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612

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DESeq2 log2FC vst()

updated 11 months ago by ATpoint ★ 4.8k • written 11 months ago by lifeonmars • 0

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1.0k

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DESeq2 SingleCell log2FC

2.1 years ago paria.alipour • 0

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2.3k

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DESeq2 Log2FC RNASeqData

2.4 years ago Iwan • 0

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1.0k

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DESeq2 LRT multifactorial up/down-reg log2FC

updated 2.4 years ago by James W. MacDonald 68k • written 2.4 years ago by Laia ▴ 10

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6.4k

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DESeq2 log2FC

2.7 years ago User000 • 0

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1.8k

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log2FC DESeq2 GSEA voom limma

updated 2.8 years ago by Gordon Smyth 52k • written 2.8 years ago by Yang Shi ▴ 10

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3.5k

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edger log2FC

written 5.6 years ago by matteo.buti • 0

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1.7k

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deseq2 log2fc standard error timecourse

updated 7.3 years ago by ellascottgm • 0 • written 7.3 years ago by Verena • 0

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1.6k

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deseq2 log2fc shrinkage

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by aec ▴ 90

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6.7k

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deseq2 L2FC log2fc

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by sup230 ▴ 30

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4.3k

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deseq2 log2fc

updated 8.6 years ago by Michael Love 43k • written 8.6 years ago by David R ▴ 90

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2.5k

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deseq2 chipseq counts log2fc error

updated 9.0 years ago by Michael Love 43k • written 9.0 years ago by robin.uchiyama • 0

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7.2k

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limma pvalue log2fc log2

updated 2.5 years ago by James W. MacDonald 68k • written 9.1 years ago by serpalma.v ▴ 60

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6.4k

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deseq2 differential gene expression log2fc

9.2 years ago Osvaldo ▴ 40

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2.6k

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deseq2 R log2fc

updated 9.5 years ago by Michael Love 43k • written 9.5 years ago by Sushant Pawar • 0

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2.3k

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scan Log2FC

updated 9.8 years ago by Gordon Smyth 52k • written 9.8 years ago by Vani ▴ 20

17 results • Page 1 of 1

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Answer: Typo in the help of lmFit() by Gordon Smyth 52k

Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…

Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by caroline.zanchi ▴ 10

Thank you ! ![enter image description here][1] In the end I did ```r rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…

Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin by James W. MacDonald 68k

The obvious solution is to use cloud computing, which is likely cheaper than getting more RAM for your computer.

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k

``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your explanation, that makes sense. Do you have any suggestions on how to deal with this issue? if it is an issue? especially…

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Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

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