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signeR
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Expanded vcf
signeR
mutationcountmatrix
expandedvcf
3.4 years ago
Nikita
• 0
0
votes
1
reply
716
views
Error Message in signeR
signeR
getseq
updated 5.0 years ago by
renan.valieris
▴ 10 • written 5.0 years ago by
TRASA
• 0
0
votes
2
replies
909
views
VCF files incompatible with signeR
software error
signeR
5.3 years ago
Dan
• 0
1
vote
3
replies
1.0k
views
Installing SigneR problem
signer
install error
updated 5.4 years ago by
shepherl
3.8k • written 5.4 years ago by
taha.valizadeh
• 0
0
votes
4
replies
1.3k
views
about the package signeR
signeR
updated 7.3 years ago by
renan.valieris
▴ 10 • written 7.3 years ago by
Bogdan
▴ 670
1
vote
3
replies
3.0k
views
signeR(): wrong sign in 'by' argument
signeR
updated 7.4 years ago by
renan.valieris
▴ 10 • written 7.4 years ago by
Miguel Juliá
• 0
6 results • Page
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Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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