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parsing discrete colors in pathview KEGG
SIM
pathview
SIM
pathview
10.7 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.2k
views
Farms/Call.INI using oligo package?
probe
affy
oligo
SIM
farms
probe
affy
oligo
SIM
farms
10.9 years ago
Djork Clevert
▴ 210
0
votes
4
replies
3.4k
views
Pathview for global and overview maps Re: using pathview about hsa01100
Pathways
graph
PROcess
SIM
gage
pathview
Pathways
graph
PROcess
SIM
gage
pathview
updated 11.2 years ago by
Ed
▴ 230 • written 11.2 years ago by
Luo Weijun
★ 1.6k
0
votes
0
replies
1.1k
views
SNP6.0 annotation
SNP
Annotation
probe
annotate
SIM
SNP
Annotation
probe
annotate
SIM
12.0 years ago
Guest User
★ 13k
0
votes
1
reply
1.6k
views
KEGGgraph bug
Pathways
Organism
SIM
KEGGgraph
Pathways
Organism
SIM
KEGGgraph
updated 14.9 years ago by
Marc Carlson
★ 7.2k • written 14.9 years ago by
Fraser Sim
▴ 270
0
votes
6
replies
1.7k
views
installation of Rgraphviz
Rgraphviz
SIM
Rgraphviz
SIM
updated 15.5 years ago by
Patrick Aboyoun
★ 1.6k • written 15.5 years ago by
ravi
▴ 130
0
votes
8
replies
1.8k
views
FW: Graphviz in Vista64
Rgraphviz
SIM
Rgraphviz
SIM
updated 15.7 years ago by
Martin Morgan
25k • written 15.7 years ago by
Sim, Fraser
▴ 350
0
votes
0
replies
1.6k
views
Cutoff to use for IQR filtering in genefilter
genefilter
affy
limma
GeneSpring
affylmGUI
GLAD
SIM
genefilter
affy
limma
GeneSpring
16.3 years ago
Mark Cowley
▴ 400
8 results • Page
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Answer: Analysis of 2*4 factorial design
by
Gordon Smyth
51k
This is covered by Section 9.5 of the limma User's Guide. The analysis with a single-factor is much better. Your definition of A2 vs A1 …
Comment: Zero intra-block correlation in RRBS analysis using voomLmFit with block
by
Gordon Smyth
51k
It might be ok to estimate the intrablock correlation from the M-values. But then, if you do that, you may as well do the whole analysis in…
Answer: limma technical repeat correction
by
Gordon Smyth
51k
The technical samples should be averaged. Then use duplicateCorrelation() with block=PatientID.
Comment: New to mass spec data analysis
by
abhisek001
• 0
Thanks for your kind responses.
Comment: Duplicate row.names when building SummarizedExperiment with make_se in DEP
by
Anni
• 0
I encountered the same problem. Problem seems to be "make_se()" function that does *not* use variable 'label' to bind colData to assay, but…
Votes
Differential expression analysis starting from TPM data
Answer: How to identify top most variable genes from log2 normalized data?
Answer: How to identify top most variable genes from log2 normalized data?
Answer: clusterProfiler enrichGO on only T-cell related GO terms
Answer: clusterProfiler enrichGO on only T-cell related GO terms
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James W. MacDonald
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Peter Langfelder
★ 3.0k
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Assa Yeroslaviz
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