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RNA-seq read simulation for benchmarking differential expression/splicing variance
polyester simulation RNA-seq syntheticdata
updated 5.2 years ago by 53k • written 5.2 years ago by ▴ 70
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1.4k
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Any pointers on simulating cell outliers?
splatter simulation
7.7 years ago luke.zappia ▴ 50
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1.3k
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Could an experienced user of Polyester help me with some questions?
rna-seq polyester simulation time course
8.1 years ago fa.gholizadeh89 • 0
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2
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2.1k
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How to simulate a count matrix using Polyester
simulation count matrix RNA-seq Polyester
updated 8.1 years ago by ▴ 210 • written 8.1 years ago by • 0
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1.5k
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Polyester - creating simulated reads based on raw count matrix
polyester rnaseq simulation
8.4 years ago sseo2 • 0
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1.5k
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Job: Post-doc in mathematical modeling on phenotypic evolution and embryonic development
job computational biology simulation evolution Gene network Job
8.5 years ago isaac.salazar • 0
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Job: postdoctoral position in Computational Biology/Statistics/Evolutionary Biology in Madrid, Spain
bioconductor R jobs C++ simulation Job
9.0 years ago Ramon Diaz-Uriarte ▴ 70
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Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Answer: Incosistencies in buildSNNGraph() function
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
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