Showing : splatter • reset
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Splatter (unknown correlation between gene expression level in different cell types)
SingleCellData splatter
updated 2.0 years ago by ▴ 50 • written 2.0 years ago by • 0
1
vote
2
replies
845
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Splatter: which parameters can cause individual variability( expression levels of genes should change across samples)
SingleCellExperiment splatter
2.5 years ago Fatima • 0
0
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2
replies
897
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I cannot install the splatter on colab
splatter biocmanager
written 3.2 years ago by • 0
0
votes
1
reply
733
views
DE analysis packages not detecting Splat DE simulated genes
splatter
updated 3.7 years ago by ▴ 50 • written 3.7 years ago by • 0
0
votes
1
reply
657
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change values on Differential Expression parameters
splatter
updated 4.6 years ago by ▴ 50 • written 4.6 years ago by • 0
0
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5
replies
1.2k
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How to use Splatter to simulate a known number of DE genes in only two groups of cells ?
splatter Splatter
updated 5.3 years ago by ▴ 50 • written 5.3 years ago by • 0
4
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2
replies
950
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Splatter: simulating fold changes for specific genes?
splatter
5.5 years ago Brian Haas ▴ 90
1
vote
1
reply
973
views
Any pointers on simulating cell outliers?
splatter simulation
6.0 years ago luke.zappia ▴ 50
5
votes
2
replies
1.7k
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Accessing normalized counts
splatter singlecellexperiment scater
6.1 years ago luke.zappia ▴ 50
2
votes
3
replies
1.3k
views
splatter simulating paths
splatter single cell
6.1 years ago nikolaspapadop ▴ 10
0
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1
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887
views
Simulating paths returns identical values
splatter
6.1 years ago luke.zappia ▴ 50
0
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1
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1.1k
views
Splatter: How to simulate cells in different groups and different path at the same time?
splatter
6.5 years ago luke.zappia ▴ 50
0
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1
reply
1.1k
views
Control group size
splatter
6.5 years ago luke.zappia ▴ 50
3
votes
3
replies
2.3k
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is SCEset fully abandoned in scran?
scran scater splatter normalization
updated 6.6 years ago by ▴ 90 • written 6.6 years ago by • 0
0
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1
reply
919
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Robustness of Splat cell grouping
splatter
6.9 years ago luke.zappia ▴ 50
0
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3
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2.0k
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Trouble installing splatter
installation splatter
7.0 years ago luke.zappia ▴ 50
16 results • Page 1 of 1
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Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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