Bioconductor Single cell sequencing

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cmdscale zinbwave scRNA-seq single cell sequencing RNA-seq

updated 5.2 years ago by davide risso ▴ 980 • written 5.3 years ago by Wagaa ▴ 10

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assayData() scRNA-seq single cell sequencing assayData Bioconductor

updated 5.3 years ago by Kevin Blighe ★ 4.0k • written 5.3 years ago by Wagaa ▴ 10

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single cell sequencing multi-omics data mining and integration Job

6.2 years ago • updated 6.1 years ago Julie Zhu ★ 4.3k

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single cell sequencing RNA-Seq ChIP-Seq ATAC-Seq Job

6.2 years ago • updated 6.1 years ago Julie Zhu ★ 4.3k

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Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Answer: EuroBioC2023 abstract submission is open! by efuite222 • 0

Abstract submissions are now open for the #EuroBioC2023 conference in Ghent, Belgium, from September 20-22; submit by April 14 for opportu…

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …

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Comment: readDNAStringSet with non DNA characters

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

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