Biostar Zinbwave

Showing : zinbwave • reset

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269

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edgeR DESeq2 single-cell scRNAseq zinbwave

updated 4 months ago by Aaron Lun ★ 27k • written 4 months ago by vincent.croset ▴ 20

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394

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DESeq2 ZINB zinbwave deseq

updated 7 months ago by Michael Love 34k • written 7 months ago by rowcyclecamp • 0

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154

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zinbwave PCA

11 months ago Assa Yeroslaviz ★ 1.5k

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323

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scRNA zinbwave batch IntegratedData

updated 12 months ago by davide risso ▴ 870 • written 12 months ago by Assa Yeroslaviz ★ 1.5k

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288

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 14 months ago by Michael Love 34k • written 14 months ago by vincent.croset ▴ 20

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715

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cmdscale zinbwave scRNA-seq single cell sequencing RNA-seq

updated 14 months ago by davide risso ▴ 870 • written 15 months ago by Wagaa ▴ 10

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763

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zinbwave deseq2 vegan

updated 22 months ago by James W. MacDonald 58k • written 22 months ago by zcbthug • 0

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400

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deseq2 glm zinbwave ruvseq

updated 2.8 years ago by Michael Love 34k • written 2.8 years ago by Jakub ▴ 30

8 results • Page 1 of 1

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Comment: Volcano plots of DEGs from Swish are weird by Qin ▴ 10

Thans for your reply. I'm sorry for reply so late, because I didn't getting any messages in my email. I will read details of the vignette.

Comment: At least one covariate is confounded with batch! Please remove confounded covari by NewBioInfo • 0

Thank you, James. I was indeed using the wrong matrix. The `nonExtimable` did give me the column name which was causing the issue but I do …

Comment: Returning to edgeR version 3.26.1? by Gordon Smyth 43k

I don't think that any changes to edgeR between 3.26.1 and 3.26.8 could have caused the changes that you show.

Comment: Returning to edgeR version 3.26.1? by mvanhorn • 0

Thank you very much for your reply! Our project is a reanalysis of large sets of RNA-seq data to identify circular RNAs using the CIRIquan…

Comment: "full model matrix is less than full rank" by ATpoint ▴ 840

My best guess is that young and old are not "young" or "old" but include some hidden whitespaces like " young" or "old ". That would then m…

Votes

simultaneous use of robust and weighting methods in limma

Answer: Swish direction of comparison based on order of factors

Comment: Gradient dotplot

Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi

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Scholar to Gordon Smyth 43k

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Hans-Ulrich Klein ▴ 330