Biostar Zinbwave

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380

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edgeR DESeq2 single-cell scRNAseq zinbwave

updated 8 months ago by Aaron Lun ★ 27k • written 8 months ago by vincent.croset ▴ 20

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524

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DESeq2 ZINB zinbwave deseq

updated 11 months ago by Michael Love 35k • written 11 months ago by rowcyclecamp • 0

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200

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zinbwave PCA

15 months ago Assa Yeroslaviz ★ 1.5k

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423

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scRNA zinbwave batch IntegratedData

updated 16 months ago by davide risso ▴ 870 • written 16 months ago by Assa Yeroslaviz ★ 1.5k

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366

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 18 months ago by Michael Love 35k • written 18 months ago by vincent.croset ▴ 20

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1.1k

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cmdscale zinbwave scRNA-seq single cell sequencing RNA-seq

updated 18 months ago by davide risso ▴ 870 • written 19 months ago by Wagaa ▴ 10

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971

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zinbwave deseq2 vegan

updated 2.2 years ago by James W. MacDonald 58k • written 2.2 years ago by zcbthug • 0

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440

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deseq2 glm zinbwave ruvseq

updated 3.1 years ago by Michael Love 35k • written 3.1 years ago by Jakub ▴ 50

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Comment: TSSEscore function in ATACseqQC package by Ou, Jianhong ★ 1.3k

Hi Yu-Yu, May I know the version of ATACseqQC? Thank you. Jianhong.

Comment: using the goana function from edgeR by Gordon Smyth 44k

`goana` does an over-representation analysis so the User's Guide wording seems correct. If you don't use the extra capabilities of `goana` …

Answer: How to find the BSgenome object that provided the seqinfo of a GRanges object ? by Hervé Pagès 15k

Yup, `getBSgenome()`.

Comment: using the goana function from edgeR by David Rengel ▴ 70

Thanks a lot Gordon, I misunderstood the way the analysis are performed, I see now it works the way topGO does. It is nice to have annotat…

Comment: Where can I find EnsDb.Hsapiens.v105? by Johannes Rainer ★ 1.9k

What version of R and `AnnotationHub` are you using? Release 105 is definitely available for the current Bioconductor release (3.14) with R…

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C: edgeR design matrix and contrasts: how to make contrast between groups that aren

Answer: Why is "SimpleList" not inheriting "list" ?

C: Reading gff files in R

A: Reading gff files in R

Comment: Warning messages on Apple M1 BigSur

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Popular Question to Ou, Jianhong ★ 1.3k