Showing : singleCellExperiment • reset
4
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6
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602
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Merging of Human and Mouse SingleCellExperiment Objects Error
SingleCellExperiment
4 months ago Dario Strbenac ★ 1.5k
1
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2
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966
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Reduce single cell experiment size to use as reference for annotation with SingleR
SingleR SingleCellExperiment
5 months ago elgomez • 0
1
vote
5
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889
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Recommendation for large.n in filterByExpr
scRNAseq edgeR SingleCellExperiment
9 months ago duez.tolga • 0
1
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3
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1.8k
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Combining and using 10x Genomics output in SingleCellExperiment Objects
SingleCellExperiment
written 5.1 years ago by ▴ 360
0
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2
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864
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runPCA in a SingleCellExperiment results ina colMeans error
scran SingleCellExperiment
11 months ago Lluís Revilla Sancho ▴ 730
0
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1
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354
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When should I correct for batch effects
BatchEffect SingleCellExperiment
updated 3 months ago by 66k • written 3 months ago by • 0
0
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3
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525
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Easiest way to convert read10xMolInfo data into a dataframe in R with gene labels as row names
tidyverse R SingleCellExperiment SingleCellData
updated 5 months ago by • 0 • written 5 months ago by • 0
0
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0
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178
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rpk per cell saved in SCE object.
SingleCellExperiment
4 months ago JalapenoCornbread • 0
0
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2
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951
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Error in SingleR, no common genes between 'test' and 'ref'
singleR SingleCellExperiment SingleCellData
10 months ago Matvii Mykhailichenko • 0
0
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1
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525
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Subsetting cells from a single cell experiment
SingleCellExperiment
written 7 months ago by • 0
10 results • Page 1 of 1
Recent ...
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Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue by shepherl 3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
Comment: ChAMP installation issue by Tahirah • 0
Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by James W. MacDonald 66k
Yes, you can use `limma`.
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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