Showing : snpmatrix • reset
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Parsing through snp matrix
snpmatrix GGI
5.1 years ago GENOMIC_region • 0
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Error in snpStats::read.pedfile: GeneGeneInter
snpmatrix ped
6.3 years ago GENOMIC_region • 0
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snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
10.6 years ago Stephanie M. Gogarten ▴ 870
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how to convert genotype snp matrix to nucleotide genotypes?
SNP convert snpMatrix SNP convert snpMatrix
updated 11.0 years ago by 6.7k • written 11.0 years ago by ▴ 20
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col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.1 years ago by 6.7k • written 11.1 years ago by ▴ 10
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6
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5.6k
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Calculate heterozygosity % using SNP genotype data
SNP snpMatrix SNP snpMatrix
updated 11.8 years ago by 6.7k • written 11.8 years ago by ▴ 210
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3
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2.8k
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GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 20
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1.5k
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convert GGtools object (generated by vcf2sm) to snpMatrix class or other class
SNP convert GGtools snpMatrix SNP convert GGtools snpMatrix
updated 12.9 years ago by 6.7k • written 12.9 years ago by ▴ 290
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1.1k
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Problems Reading SNPs into snpMatrix
SNP snpMatrix SNP snpMatrix
updated 13.0 years ago by 6.7k • written 13.0 years ago by ▴ 10
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908
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crlmm and snpMatrix
snpMatrix crlmm snpMatrix crlmm
updated 13.9 years ago by ★ 4.3k • written 13.9 years ago by ▴ 270
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major alterations to GGdata/GGtools planned
SNP snpMatrix cycle SNP snpMatrix cycle
16.1 years ago Vincent J. Carey, Jr. 6.7k
11 results • Page 1 of 1
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
That ll be helpful. Thank you.
Comment: Log-cpm values from limma by Shaimaa Gamal • 0
I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…
Comment: DSS CpG coverage threshold by j.gilbert • 0
Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Segmentation is of the whole genome, I'll write some code for doing this later today.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …
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A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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