Showing : snpmatrix • reset
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Calculate heterozygosity % using SNP genotype data
SNP snpMatrix SNP snpMatrix
updated 11.8 years ago by 6.7k • written 11.8 years ago by ▴ 210
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5
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3.7k
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how to convert genotype snp matrix to nucleotide genotypes?
SNP convert snpMatrix SNP convert snpMatrix
updated 11.0 years ago by 6.7k • written 11.0 years ago by ▴ 20
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3
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2.8k
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GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 20
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1
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1.4k
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col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.1 years ago by 6.7k • written 11.1 years ago by ▴ 10
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1
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1.5k
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convert GGtools object (generated by vcf2sm) to snpMatrix class or other class
SNP convert GGtools snpMatrix SNP convert GGtools snpMatrix
updated 12.9 years ago by 6.7k • written 12.9 years ago by ▴ 290
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1
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908
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crlmm and snpMatrix
snpMatrix crlmm snpMatrix crlmm
updated 13.9 years ago by ★ 4.3k • written 13.9 years ago by ▴ 270
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1
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1.1k
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Problems Reading SNPs into snpMatrix
SNP snpMatrix SNP snpMatrix
updated 13.0 years ago by 6.7k • written 13.0 years ago by ▴ 10
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0
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525
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Parsing through snp matrix
snpmatrix GGI
5.1 years ago GENOMIC_region • 0
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1.8k
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snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
10.6 years ago Stephanie M. Gogarten ▴ 870
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509
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Error in snpStats::read.pedfile: GeneGeneInter
snpmatrix ped
6.3 years ago GENOMIC_region • 0
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883
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major alterations to GGdata/GGtools planned
SNP snpMatrix cycle SNP snpMatrix cycle
16.1 years ago Vincent J. Carey, Jr. 6.7k
11 results • Page 1 of 1
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I have tried what you suggested. I started with methylation loci. I created segment1 and segment2 but how to combine them bec…
Comment: EGSEA usage with microarray data (with vooma)? by Chris • 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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