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Showing :
snpmatrix
•
reset
0
votes
6
replies
5.6k
views
Calculate heterozygosity % using SNP genotype data
SNP
snpMatrix
SNP
snpMatrix
updated 11.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.8 years ago by
gowtham
▴ 210
0
votes
5
replies
3.7k
views
how to convert genotype snp matrix to nucleotide genotypes?
SNP
convert
snpMatrix
SNP
convert
snpMatrix
updated 11.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.0 years ago by
Tereza Jezkova UNLV
▴ 20
0
votes
3
replies
2.8k
views
GWAS with Affymetrix SNP 6.0
SNP
oligo
snpMatrix
snpStats
SNP
oligo
snpMatrix
snpStats
updated 11.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.9 years ago by
David Hervás
▴ 20
0
votes
0
replies
1.8k
views
snpStats/GWASTools conversion
cdf
convert
snpMatrix
snpStats
GWASTools
cdf
convert
snpMatrix
snpStats
GWASTools
10.6 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
1.5k
views
convert GGtools object (generated by vcf2sm) to snpMatrix class or other class
SNP
convert
GGtools
snpMatrix
SNP
convert
GGtools
snpMatrix
updated 12.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.9 years ago by
Mao Jianfeng
▴ 290
0
votes
1
reply
1.4k
views
col.summary error in snpStats
SNP
Sequencing
Annotation
snpMatrix
snpStats
SNP
Sequencing
Annotation
snpMatrix
snpStats
updated 11.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.1 years ago by
Tereza Jezkova - personal
▴ 10
0
votes
1
reply
1.1k
views
Problems Reading SNPs into snpMatrix
SNP
snpMatrix
SNP
snpMatrix
updated 13.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.0 years ago by
Chris K. Fuller
▴ 10
0
votes
1
reply
908
views
crlmm and snpMatrix
snpMatrix
crlmm
snpMatrix
crlmm
updated 13.9 years ago by
Benilton Carvalho
★ 4.3k • written 13.9 years ago by
Tim Rayner
▴ 270
0
votes
0
replies
883
views
major alterations to GGdata/GGtools planned
SNP
snpMatrix
cycle
SNP
snpMatrix
cycle
16.1 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
525
views
Parsing through snp matrix
snpmatrix
GGI
5.1 years ago
GENOMIC_region
• 0
0
votes
0
replies
509
views
Error in snpStats::read.pedfile: GeneGeneInter
snpmatrix
ped
6.3 years ago
GENOMIC_region
• 0
11 results • Page
1 of 1
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
That ll be helpful. Thank you.
Comment: Log-cpm values from limma
by
Shaimaa Gamal
• 0
I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…
Comment: DSS CpG coverage threshold
by
j.gilbert
• 0
Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Segmentation is of the whole genome, I'll write some code for doing this later today.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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DevelopingHippo
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