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snv
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CustomProDB InputVcf() - Issue getting the GRanges INDEL object from VCF file
vcf
snv
gatk
customprodb
inputvcf
6.4 years ago
Elena.M
• 0
0
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2.5k
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Adaptive Lasso and CrossValidation for SNV selection
adaptive-lasso
snv
biomarkers
cv
glmnet
9.0 years ago
crichard
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2
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1.5k
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Locating enhancers that are mutated
snv
granges
genomicranges
variantannotation
indel
updated 9.3 years ago by
Michael Lawrence
★ 11k • written 9.3 years ago by
addyS
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3
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3
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2.7k
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about VCF and BAM files
SNV
BAM
9.6 years ago
Bogdan
▴ 670
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Comment: upstream git branches of bioc-release
by
TrentonCollier99
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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