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customprodb
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267
views
customProDB easyrun error in generating a custom protein database: Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse")
customProDB
5 months ago
Esraa
• 0
0
votes
1
reply
311
views
Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse") : i…
customProDB
easyrun
error
mm10
Mus_musculus_Data
updated 6 months ago by
James W. MacDonald
64k • written 6 months ago by
Esraa
• 0
0
votes
0
replies
205
views
customProDB: error aberrant fasta from SNV
customProDB
10 months ago
finoa.li
• 0
0
votes
0
replies
340
views
CustomProDB: specify a snp dataset to be used for the SNP annotation
customProDB
16 months ago
04.marshal-decibel
• 0
0
votes
0
replies
592
views
How to get the chrominfo from ENSEMBL? (biomaRt and customProDB)
biomaRt
customProDB
17 months ago
04.marshal-decibel
• 0
0
votes
1
reply
654
views
customProDB: function PrepareAnnotationEnsembl() not working (biomart issue?)
customProDB
Ensembl connection
biomart
4.1 years ago
laura.fancello
• 0
0
votes
1
reply
667
views
CustomProDB InputVcf() - Issue getting the GRanges INDEL object from VCF file
vcf
snv
gatk
customprodb
inputvcf
4.4 years ago
Elena.M
• 0
3
votes
8
replies
2.6k
views
Create protein sequences including variants from a VCF file
VariantAnnotation
customProDB
4.8 years ago • updated 4.7 years ago
daniel.magnus.bader
▴ 40
0
votes
1
reply
800
views
customProDB: "complex" SNV scenarios handling
customprodb
updated 5.2 years ago by
xiaojing.wang
▴ 50 • written 5.3 years ago by
iranmdl15
• 0
0
votes
1
reply
818
views
Error with PrepareAnnotationRefseq: "tablenametotrack2: UCSC table "refGene" is not supported"
customProDB
updated 5.3 years ago by
xiaojing.wang
▴ 50 • written 5.4 years ago by
samupatt
• 0
0
votes
1
reply
829
views
aaVariation function bug (Methonine instead of Leucine)
customprodb
translation
updated 5.3 years ago by
xiaojing.wang
▴ 50 • written 5.6 years ago by
georges.bedran
• 0
0
votes
3
replies
1.5k
views
calculateRPKM error in customProDB
software error
customprodb
updated 2.0 years ago by
Anne
• 0 • written 6.4 years ago by
javamng
▴ 10
0
votes
0
replies
814
views
Annotation package generation error for customprodb for hg38
customprodb
5.8 years ago
arunima2
• 0
1
vote
1
reply
1.3k
views
error with calculateRPKM in customProDB
customProDB
software error
updated 2.0 years ago by
Anne
• 0 • written 6.3 years ago by
javamng
▴ 10
0
votes
1
reply
958
views
customProDB, OutputVarproseq function update (snvproseq)
customprodb
updated 7.0 years ago by
xiaojing.wang
▴ 50 • written 7.0 years ago by
georges.bedran
• 0
0
votes
0
replies
1.0k
views
PrepareAnnotationRefseq2 function error!
PGA
customprodb
7.3 years ago
yeh234
• 0
0
votes
1
reply
948
views
CustomproDB JunctionType function
customprodb
updated 7.4 years ago by
xiaojing.wang
▴ 50 • written 7.4 years ago by
georges.bedran
• 0
0
votes
1
reply
956
views
Pull request for customProDB package
customProDB
featurerequest
updated 7.6 years ago by
Dan Tenenbaum
★ 8.2k • written 7.6 years ago by
matt.chambers42
▴ 10
2
votes
4
replies
1.7k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 8.4 years ago by
xiaojing.wang
▴ 50 • written 8.4 years ago by
kristenbeck527
• 0
2
votes
2
replies
1.5k
views
customProDB: issues getting dbSNP data for human (hg19)
customprodb
dbsnp
refseq
varianttools
updated 8.4 years ago by
xiaojing.wang
▴ 50 • written 8.4 years ago by
kristenbeck527
• 0
2
votes
4
replies
1.5k
views
customProDB: issues getting dbSNP data for non-model organism
ensembl
macaque
dbsnp
customprodb
updated 8.4 years ago by
xiaojing.wang
▴ 50 • written 8.4 years ago by
kristenbeck527
• 0
21 results • Page
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Recent ...
Replies
Answer: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
Peter Hickey
▴ 650
An example usually helps. Here's a way to do it using base R. ``` library(DropletUtils) # Mocking up some 10X HDF5-formatted data. out <-…
Answer: rDGIdb package inconsistency with web interface
by
James W. MacDonald
64k
It doesn't appear to be inconsistent. Here is the [API call result][1]. And the [query on the old version][2]. Although as you may be notin…
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
Peter Hickey
▴ 650
Initially posted to https://github.com/MarioniLab/DropletUtils/issues/104
Comment: How to read fcs3.2 files
by
James W. MacDonald
64k
You need to supply more information than saying you tried things and they didn't work. Show code with error messages.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Looks good then.
Votes
Answer: SingleR annotation of several slots/patients
Answer: List of Deprecated Packages for Bioc3.18
Attempting to import SBML file using R
Answer: RNASeq time course analysis, missing time points for control
Answer: biomaRt not working - lazy table error
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