Showing : spatialexperiment • reset
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SingleCellExperiment convenience function for metadata+expression?
SpatialExperiment SingleCellExperiment SpatialFeatureExperiment
updated 27 days ago by ▴ 750 • written 4 weeks ago by • 0
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133
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cbind for multiple SpatialExperiment takes so much time
SpatialExperiment SingleCellExperiment
3 months ago Ibrahim • 0
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1
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457
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Basic import of seqFISH from Spatial Genomics genePS into SpatialExperiment
seqFISH SpatialExperiment
6 months ago Matthew Thornton ▴ 380
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585
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Job: Postdoc+PhD position: Spatial & Single-Cell Computational Immunogenomics for Cancer Diagnosis
JobPosting CuratedAtlasQueryR MoleculeExperiment SingleCellExperiment SpatialExperiment
8 months ago Stefano Mangiola ▴ 20
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381
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News: Interested in the analysis of Spatial Omics data?
tidySpatialExperiment SpatialExperiment MoleculeExperiment
10 months ago info ▴ 10
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650
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Job: Bioinformatics Spatial Omics and Proteomics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
Proteomics JobPosting SingleCell Spatial SpatialExperiment
11 months ago Peter Hickey ▴ 750
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Job: Bioinformatics Spatial Omics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
SpatialExperiment JobPosting
20 months ago Peter Hickey ▴ 750
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2.1k
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Convert SpatialExperiment Object to Seurat Object
scuttle scater seurat SpatialExperiment
2.0 years ago cathalgking ▴ 10
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1.0k
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cell_count column in SpatialExperiment Object
scuttle scater SpatialExperiment
updated 2.1 years ago by ▴ 160 • written 2.1 years ago by ▴ 10
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> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
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The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
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> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
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This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
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