Bioconductor Spatialexperiment

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824

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SpatialExperiment SingleCellExperiment SpatialFeatureExperiment

updated 10 months ago by Stefano Mangiola ▴ 40 • written 11 months ago by sarah.williams • 0

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392

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SpatialExperiment SingleCellExperiment

14 months ago Ibrahim • 0

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721

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seqFISH SpatialExperiment

17 months ago Matthew Thornton ▴ 390

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JobPosting CuratedAtlasQueryR MoleculeExperiment SingleCellExperiment SpatialExperiment

18 months ago Stefano Mangiola ▴ 40

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633

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tidySpatialExperiment SpatialExperiment MoleculeExperiment

20 months ago info ▴ 10

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1.1k

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Proteomics JobPosting SingleCell Spatial SpatialExperiment

22 months ago Peter Hickey ▴ 760

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1.3k

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SpatialExperiment JobPosting

2.6 years ago Peter Hickey ▴ 760

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2.9k

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scuttle scater seurat SpatialExperiment

2.9 years ago cathalgking ▴ 10

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1.4k

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scuttle scater SpatialExperiment

updated 2.9 years ago by alan.ocallaghan ▴ 160 • written 3.0 years ago by cathalgking ▴ 10

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Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10

Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…

Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k

Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…

Comment: Ensembl plants at annotationHub? by jwp48 • 0

Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…

Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Ludwig Geistlinger ▴ 80

When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…

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limma moderated t-statistics and B-statistics

Comment: Guitar R package requires update due to dependency GenomicFeatures

A: how to control age and gender effect in expression data using DESeq2

how to control age and gender effect in expression data using DESeq2

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