Showing : spatialexperiment • reset
3
votes
2
replies
681
views
SingleCellExperiment convenience function for metadata+expression?
SpatialExperiment SingleCellExperiment SpatialFeatureExperiment
updated 7 months ago by ▴ 40 • written 9 months ago by • 0
0
votes
0
replies
337
views
cbind for multiple SpatialExperiment takes so much time
SpatialExperiment SingleCellExperiment
12 months ago Ibrahim • 0
0
votes
1
reply
617
views
Basic import of seqFISH from Spatial Genomics genePS into SpatialExperiment
seqFISH SpatialExperiment
14 months ago Matthew Thornton ▴ 380
0
votes
0
replies
944
views
Job: Postdoc+PhD position: Spatial & Single-Cell Computational Immunogenomics for Cancer Diagnosis
JobPosting CuratedAtlasQueryR MoleculeExperiment SingleCellExperiment SpatialExperiment
16 months ago Stefano Mangiola ▴ 40
0
votes
0
replies
540
views
News: Interested in the analysis of Spatial Omics data?
tidySpatialExperiment SpatialExperiment MoleculeExperiment
18 months ago info ▴ 10
0
votes
0
replies
933
views
Job: Bioinformatics Spatial Omics and Proteomics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
Proteomics JobPosting SingleCell Spatial SpatialExperiment
19 months ago Peter Hickey ▴ 760
0
votes
0
replies
1.2k
views
Job: Bioinformatics Spatial Omics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
SpatialExperiment JobPosting
2.4 years ago Peter Hickey ▴ 760
1
vote
0
replies
2.7k
views
Convert SpatialExperiment Object to Seurat Object
scuttle scater seurat SpatialExperiment
2.7 years ago cathalgking ▴ 10
0
votes
1
reply
1.3k
views
cell_count column in SpatialExperiment Object
scuttle scater SpatialExperiment
updated 2.7 years ago by ▴ 160 • written 2.8 years ago by ▴ 10
9 results • Page 1 of 1
Recent ...
Replies
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Was anyone else able to put the pieces together using the reply above? I read in one 10X sample using DropletUtils::read10xCounts() and thi…
Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments by Erik Wright ▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
Awards • All
Popular Question to dan.gatti • 0
Popular Question to shepherl 4.2k
Popular Question to Gordon Smyth 53k
Popular Question to Steve Lianoglou ★ 13k
Popular Question to abaed • 0
Locations • All
Germany, 1 minute ago
United States, 7 minutes ago
United States, 21 minutes ago
United States, 30 minutes ago
Germany, 39 minutes ago
Traffic: 789 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6