Bioconductor Spike-in

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Spike-in RNASeqR DESeq2 Normalization rna-seq

updated 2.1 years ago by manuel.fernandez • 0 • written 3.5 years ago by cicely.day • 0

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deseq2 apeglm rna-seq spike-in

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by nadezda.fursova ▴ 10

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deseq2 Tximport Sizefactors normalizationfactors spike-in

updated 5.3 years ago by Michael Love 43k • written 5.3 years ago by Hina Bandukwala • 0

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scran spike-in

7.5 years ago • updated 7.4 years ago supremerulersuraj • 0

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deseq2 ruvseq spike-in time course time series

updated 7.8 years ago by davide risso ▴ 980 • written 7.8 years ago by staceyborrego ▴ 20

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Answer: DiffBind - question on the use of filtered or unfiltered input data by vejogos850 • 0

DiffBind - question on the use of filtered or unfiltered input data is the best to deal with, and it provides us the solutions that we are …

Answer: Help with defining groups by Gordon Smyth 53k

Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…

Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …