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splicer
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1
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5
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1.7k
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using BitSeq data as input for spliceR
bitseq
spliceR
9.0 years ago
elle
▴ 10
2
votes
4
replies
2.1k
views
Error in SpliceR and GTF file issue
SpliceR
Cuffdiff
updated 8.7 years ago by
deppt002
• 0 • written 8.9 years ago by
mfahim
• 0
0
votes
1
reply
979
views
missing values (NA) in spliceR results
splicer
rnaseq
updated 8.9 years ago by
k.vitting.seerup
▴ 120 • written 9.6 years ago by
hliang
▴ 20
0
votes
1
reply
1.4k
views
Extract sequences corresponding to TCONS IDs from spliceR
splicer
updated 6.3 years ago by
k.vitting.seerup
▴ 120 • written 6.3 years ago by
aditi
▴ 20
1
vote
1
reply
1.4k
views
Running cufflinks for spliceR
Annotation
spliceR
Annotation
spliceR
updated 8.9 years ago by
k.vitting.seerup
▴ 120 • written 9.7 years ago by
hliang
▴ 20
0
votes
1
reply
1.2k
views
results from spliceR
spliceR
updated 8.9 years ago by
k.vitting.seerup
▴ 120 • written 9.1 years ago by
knight2ni
• 0
0
votes
4
replies
1.6k
views
browserSession for Arabidopsis
rtracklayer
Granges
spliceR
updated 8.8 years ago by
Michael Lawrence
★ 11k • written 8.8 years ago by
mfahim
• 0
1
vote
3
replies
1.7k
views
spliceR error with GTF cummeRbund input
splicer
cummerbund
updated 6.8 years ago by
lmanchon
• 0 • written 7.9 years ago by
weisbeal
▴ 10
0
votes
0
replies
1.5k
views
Differential expression workflow for alternative splicing
dexseq
bitseq
spliceR
9.0 years ago
elle
▴ 10
9 results • Page
1 of 1
Recent ...
Replies
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga
by
James W. MacDonald
65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Votes
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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