Showing : split • reset
3
votes
5
replies
2.8k
views
Splitting a TxDB or GRanges by Chromosome
GenomicRanges split chromosome TxDb
updated 3.9 years ago by 16k • written 3.9 years ago by ▴ 40
1
vote
2
replies
1.4k
views
Newbie question: how do I address a subset obtained by split()?
flowStats newbie split subset flowCore
7.2 years ago yulia.chupalova • 0
2
votes
3
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1.7k
views
Split Genomic Ranges With Reference Overlaps (Centromere)
granges genomicranges split
written 8.5 years ago by • 0
2
votes
4
replies
1.8k
views
convert a sequence to Ranges object
iranges fasta split
updated 8.7 years ago by ★ 11k • written 8.8 years ago by ★ 1.5k
2
votes
2
replies
1.3k
views
Any way to speed up splitting relatively big GRanges objects by given threshold ?
r granges split performance
updated 9.0 years ago by ★ 11k • written 9.0 years ago by ▴ 80
6
votes
11
replies
8.8k
views
How do I split GRange object (set of genomic ranges with 2 metadata column) by chromosome?
granges split r
updated 3.9 years ago by ▴ 40 • written 9.8 years ago by ▴ 80
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Comment: Highly DE genes but small count difference within conditions by shy.hippopotamus.yxmb • 0
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Comment: copy number/LOH for Affy 100K by igkryycpinmshzugby • 0
Hi John For copy number and LOH analysis from Affymetrix 100K SNP arrays you can use aroma.affymetrix or CRLMM packages in Bioconductor. …
Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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