Showing : split • reset
3
votes
5
replies
2.3k
views
Splitting a TxDB or GRanges by Chromosome
GenomicRanges split chromosome TxDb
updated 2.9 years ago by 16k • written 2.9 years ago by ▴ 40
1
vote
2
replies
1.2k
views
Newbie question: how do I address a subset obtained by split()?
flowStats newbie split subset flowCore
6.2 years ago yulia.chupalova • 0
2
votes
3
replies
1.4k
views
Split Genomic Ranges With Reference Overlaps (Centromere)
granges genomicranges split
written 7.5 years ago by • 0
2
votes
4
replies
1.5k
views
convert a sequence to Ranges object
iranges fasta split
updated 7.8 years ago by ★ 11k • written 7.8 years ago by ★ 1.5k
2
votes
2
replies
1.1k
views
Any way to speed up splitting relatively big GRanges objects by given threshold ?
r granges split performance
updated 8.0 years ago by ★ 11k • written 8.0 years ago by ▴ 80
6
votes
11
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8.0k
views
How do I split GRange object (set of genomic ranges with 2 metadata column) by chromosome?
granges split r
updated 2.9 years ago by ▴ 40 • written 8.8 years ago by ▴ 80
6 results • Page 1 of 1
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Comment: [How to construct a model.matrix ] by kyj2226 • 0
Thanks to you, I learn a lot. Many thanks, Yujin.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
thank you for your advice, I posted separate post.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Votes
Answer: [How to construct a model.matrix ]
C: DESeq2 baseMean values for each sample
C: DESeq2 baseMean values for each sample
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
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