Bioconductor Sspa

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SSPA ssizeRNA RnaSeqSampleSize

updated 14 months ago by James W. MacDonald 67k • written 14 months ago by Megan • 0

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SSPA

updated 3.3 years ago by ATpoint ★ 4.5k • written 3.3 years ago by adR ▴ 40

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rnaseqpower sspa sample size sequencing complex-design

updated 8.7 years ago by m.van_iterson ▴ 20 • written 8.7 years ago by roser.navarro • 0

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Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…

Answer: featureCounts segmentation fault with large chromosomes by vkkodali ▴ 10

Thanks to @yangliao this issue is fixed in subread v2.0.8

Comment: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion by ATpoint ★ 4.5k

For the general audience, reticulate / python (which basilisk depends on / wraps) requires explicit declaration of integers, so one needs i…

Answer: Average expression of genes across replicates by ATpoint ★ 4.5k

Not sure what you're asking. The average expression across all samples is what the `baseMean` column of `results()` returns. This is simply…

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