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stageR
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0
votes
10
replies
2.0k
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Two treatments, one control
DESeq2
stageR
15 months ago
alephreish
• 0
0
votes
2
replies
828
views
Swimming downstream: transcript fold changes
DEXSeq
stageR
23 months ago
jbono
▴ 10
0
votes
1
reply
912
views
stageR p-adj values of zero
stageR
updated 4.0 years ago by
Koen Van den Berge
▴ 180 • written 4.0 years ago by
giwa.ao
• 0
0
votes
1
reply
1.2k
views
stageR with input from DRIMSeq
DRIMSeq
stageR
updated 6.6 years ago by
Koen Van den Berge
▴ 180 • written 6.6 years ago by
sdvie
• 0
2
votes
4
replies
2.2k
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
6.7 years ago
d-joester
▴ 20
4
votes
4
replies
1.8k
views
Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
limma
stageR
decideTests
updated 6.8 years ago by
Koen Van den Berge
▴ 180 • written 6.8 years ago by
maltethodberg
▴ 180
0
votes
3
replies
1.5k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
Jack.Hearn
• 0
1
vote
5
replies
2.2k
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 7.0 years ago by
Michael Love
43k • written 7.0 years ago by
rbenel
▴ 50
2
votes
9
replies
2.5k
views
stageR NA in getAdjustedPValues() (method=dtu)
drimseq
stageR
dtu
salmon rna seq
updated 7.3 years ago by
Koen Van den Berge
▴ 180 • written 7.3 years ago by
fiona.dick91
▴ 60
9 results • Page
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
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teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Votes
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
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