Bioconductor StageR

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1.5k

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DESeq2 stageR

8 months ago • updated 7 months ago alephreish • 0

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681

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DEXSeq stageR

16 months ago jbono ▴ 10

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780

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stageR

updated 3.4 years ago by Koen Van den Berge ▴ 180 • written 3.4 years ago by giwa.ao • 0

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1.1k

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DRIMSeq stageR

updated 6.0 years ago by Koen Van den Berge ▴ 180 • written 6.0 years ago by sdvie • 0

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2.0k

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stageR rnaseqDTU DRIMSeq DEXSeq

6.1 years ago d-joester ▴ 20

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1.6k

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limma stageR decideTests

updated 6.2 years ago by Koen Van den Berge ▴ 180 • written 6.2 years ago by maltethodberg ▴ 180

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1.3k

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drimseq rnaseqdtu stager

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by Jack.Hearn • 0

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1.9k

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DEXSeq StageR rnaseqDTU

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by rbenel ▴ 40

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2.2k

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drimseq stageR dtu salmon rna seq

updated 6.7 years ago by Koen Van den Berge ▴ 180 • written 6.7 years ago by fiona.dick91 ▴ 60

9 results • Page 1 of 1

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Answer: affy::rma results doesn't match with ncbi website by James W. MacDonald 68k

Please note that RMA is a method intended to normalize and summarize a set of samples rather than a single sample (it doesn't make much sen…

Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene by shepherl 4.1k

Can you try `BiocManager::install("TxDb.Mmusculus.UCSC.mm10.knownGene", type="source")`

Comment: Limma - Complex 2-way multi-level contrast with paired samples by Elizabeth • 0

Thank you very much, James! I wasn't aware of voomLmFit, and using it gave me more logical DEG. I really appreciate your time and effort!

Answer: affy::rma results doesn't match with ncbi website by ATpoint ★ 4.7k

Exact OMCIS reproduction down to the values without code and software version is borderline impossible. Either use the values as provided o…

Answer: Use of org.Rn.eg.db with GRCr8 reference genome by James W. MacDonald 68k

You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…

Votes

Answer: Limma - Complex 2-way multi-level contrast with paired samples

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Answer: Limma - Complex 2-way multi-level contrast with paired samples

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks

Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression

Awards • All

Scholar to Michael Love 43k

Scholar to James W. MacDonald 68k

Popular Question to Wolfgang RAFFELSBERGER ▴ 140