Bioconductor StageR

Showing : stageR • reset

votes

replies

2.1k

views

DESeq2 stageR

17 months ago alephreish • 0

votes

replies

878

views

DEXSeq stageR

2.1 years ago jbono ▴ 10

votes

950

views

stageR

updated 4.2 years ago by Koen Van den Berge ▴ 180 • written 4.2 years ago by giwa.ao • 0

votes

1.3k

views

DRIMSeq stageR

updated 6.8 years ago by Koen Van den Berge ▴ 180 • written 6.8 years ago by sdvie • 0

votes

replies

2.2k

views

stageR rnaseqDTU DRIMSeq DEXSeq

6.9 years ago d-joester ▴ 20

votes

replies

1.9k

views

limma stageR decideTests

updated 6.9 years ago by Koen Van den Berge ▴ 180 • written 6.9 years ago by maltethodberg ▴ 180

votes

replies

1.7k

views

drimseq rnaseqdtu stager

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by Jack.Hearn • 0

vote

replies

2.2k

views

DEXSeq StageR rnaseqDTU

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by rbenel ▴ 50

votes

replies

2.6k

views

drimseq stageR dtu salmon rna seq

updated 7.4 years ago by Koen Van den Berge ▴ 180 • written 7.4 years ago by fiona.dick91 ▴ 60

9 results • Page 1 of 1

Recent ...

Replies

Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0

For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…

Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k

Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0

Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All