Showing : rnaseqdtu • reset
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Considerations behind the choice of RNAseq Differential Expression Analysis Tools
fishpond DESeq2 rnaseqDTU
updated 11 days ago by 43k • written 11 days ago by • 0
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Inconsistent Dirichlet-multinominal coefficient and Beta-Binominal coefficient for a transcript in DTU analysis.
rnaseqDTU DRIMSeq
2.5 years ago wangziwei0010 ▴ 10
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Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
rnaseqDTU
2.8 years ago • updated 2.7 years ago ksong ▴ 10
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1.6k
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Fold Change for rnaseq DTU
DEXSeq rnaseqDTU
3.4 years ago rbenel ▴ 40
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5
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1.6k
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DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq DRIMSeq DEXSeq rnaseqDTU
3.4 years ago bioinformatic_trainee ▴ 10
0
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763
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Plotting results of rnaseqDTU
rnaseqDTU
updated 4.2 years ago by 43k • written 4.2 years ago by ▴ 20
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867
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How to obtain the specific genelists mentioned in the RNASeq DTU workflow?
rnaseqdtu RNASeq DEXSeq DESeq2
updated 4.6 years ago by 43k • written 4.6 years ago by ▴ 10
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858
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rnaseqDTU Workflow, Precision estimation error.
rnaseqDTU
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
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2
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1.0k
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Statistics for within-condition transcript abundance comparisons
rnaseqDTU
updated 5.4 years ago by 43k • written 5.4 years ago by • 0
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3
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1.8k
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Visualization for DE transcripts
rnaseqdtu
5.6 years ago • updated 5.5 years ago rbenel ▴ 40
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rnaseqDTU log2fold change DEXSeq
DEXSeq DTU salmon rnaseqDTU foldchange
updated 5.7 years ago by 43k • written 6.0 years ago by ▴ 60
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11
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Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU DRIMseq DEXseq rna-seq
5.8 years ago saddamhusain77 • 0
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25
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dtuScaledTPM vs lengthScaledTPM in DTU analysis
tximport dtu salmon TPM rnaseqDTU
written 5.8 years ago by ▴ 60
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4
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1.9k
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stageR: Error in stageWiseAdjustment
stageR rnaseqDTU DRIMSeq DEXSeq
6.0 years ago d-joester ▴ 20
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8
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1.5k
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stageR following DEXSeq two-stage analysis
rnaseqdtu
6.0 years ago rbenel ▴ 40
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9
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2.7k
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Differential transcript expression (DTE) analysis
rnaseqDTU dtu
updated 6.0 years ago by 43k • written 6.0 years ago by ▴ 40
2
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2
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1.3k
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rnaseqDTU DTU workflow - pots-hoc Filter
DTU DRIMSeq rnaseqDTU
updated 6.0 years ago by 43k • written 6.0 years ago by ▴ 60
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1.3k
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Post-hoc filtering on the standard deviation in proportions
drimseq rnaseqdtu stager
updated 6.1 years ago by 43k • written 6.1 years ago by • 0
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5
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1.8k
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Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq StageR rnaseqDTU
updated 6.2 years ago by 43k • written 6.3 years ago by ▴ 40
19 results • Page 1 of 1
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Answer: Curiously shaped volcano plot with using oarfish + swish to do differential gene by Michael Love 43k
See swish vignette, these are explained.
Comment: Problems with oarfish + tximport + swish by Michael Love 43k
Great thanks for posting the issue and sticking with it Annaleigh
Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0
Awesome possum! Update works!! Thank you so much for the help and guidance!
Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0
Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/
Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k
> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…
Votes
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Limma Interaction Effect with Covariates
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