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rnaseqdtu
•
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2
votes
2
replies
552
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Inconsistent Dirichlet-multinominal coefficient and Beta-Binominal coefficient for a transcript in DTU analysis.
rnaseqDTU
DRIMSeq
17 months ago
wangziwei0010
▴ 10
1
vote
5
replies
1.1k
views
Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
rnaseqDTU
20 months ago • updated 18 months ago
ksong
▴ 10
2
votes
7
replies
1.1k
views
Fold Change for rnaseq DTU
DEXSeq
rnaseqDTU
2.3 years ago • updated 2.2 years ago
rbenel
▴ 30
0
votes
5
replies
1.0k
views
DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq
DRIMSeq
DEXSeq
rnaseqDTU
2.3 years ago
bioinformatic_trainee
▴ 10
0
votes
1
reply
525
views
Plotting results of rnaseqDTU
rnaseqDTU
updated 3.1 years ago by
Michael Love
41k • written 3.1 years ago by
rohitsatyam102
▴ 20
0
votes
1
reply
600
views
How to obtain the specific genelists mentioned in the RNASeq DTU workflow?
rnaseqdtu
RNASeq
DEXSeq
DESeq2
updated 3.4 years ago by
Michael Love
41k • written 3.4 years ago by
debatosh das
▴ 10
0
votes
2
replies
600
views
rnaseqDTU Workflow, Precision estimation error.
rnaseqDTU
updated 3.5 years ago by
Michael Love
41k • written 3.5 years ago by
dixit.anirudha
• 0
2
votes
2
replies
730
views
Statistics for within-condition transcript abundance comparisons
rnaseqDTU
updated 4.3 years ago by
Michael Love
41k • written 4.3 years ago by
nicog
• 0
1
vote
3
replies
1.0k
views
Visualization for DE transcripts
rnaseqdtu
4.4 years ago
rbenel
▴ 30
1
vote
1
reply
1.2k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 4.6 years ago by
Michael Love
41k • written 4.9 years ago by
fiona.dick91
▴ 60
0
votes
11
replies
1.4k
views
Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU
DRIMseq
DEXseq
rna-seq
4.7 years ago • updated 4.6 years ago
saddamhusain77
• 0
14
votes
25
replies
2.5k
views
dtuScaledTPM vs lengthScaledTPM in DTU analysis
tximport
dtu
salmon
TPM
rnaseqDTU
written 4.7 years ago by
fiona.dick91
▴ 60
2
votes
4
replies
1.4k
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
4.8 years ago
d-joester
▴ 20
2
votes
8
replies
1.1k
views
stageR following DEXSeq two-stage analysis
rnaseqdtu
4.8 years ago
rbenel
▴ 30
3
votes
9
replies
1.9k
views
Differential transcript expression (DTE) analysis
rnaseqDTU
dtu
updated 4.9 years ago by
Michael Love
41k • written 4.9 years ago by
rbenel
▴ 30
2
votes
2
replies
987
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU
DRIMSeq
rnaseqDTU
updated 4.9 years ago by
Michael Love
41k • written 4.9 years ago by
fiona.dick91
▴ 60
0
votes
3
replies
917
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 5.0 years ago by
Michael Love
41k • written 5.0 years ago by
Jack.Hearn
• 0
1
vote
5
replies
1.3k
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 5.1 years ago by
Michael Love
41k • written 5.1 years ago by
rbenel
▴ 30
18 results • Page
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Answer: Obtaining rsIDs with ENSG and variant ID information
by
Robert Castelo
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You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…
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If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…
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If we hover over the tiny little red icon next to the Linux build report, we can see that the source package isn't being distributed becaus…
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EvaLan
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Hey bekah, I wonder if you have found the solution to solve this issue? Best wishes, EvaLan
Comment: Why is DMRcate not available for Bioconductor version 3.18?
by
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48k
That's a good question. On the DMRcate landing page, one can see that the "Source package" file is missing, meaning that installation in Un…
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Comment: limma::voom vs edgeR::voomLmFit - when to use?
Answer: limma::voom vs edgeR::voomLmFit - when to use?
Answer: trying to add SingleR label to Seurat Object fails
Comment: DESeq2 - groups with biological replicates from the same patient
Answer: EdgeR: Exact test and glmQLFTest produce very different results
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