Bioconductor StageR

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2.2k

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DESeq2 stageR

18 months ago • updated 17 months ago alephreish • 0

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888

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DEXSeq stageR

2.2 years ago jbono ▴ 10

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970

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stageR

updated 4.3 years ago by Koen Van den Berge ▴ 180 • written 4.3 years ago by giwa.ao • 0

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1.4k

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DRIMSeq stageR

updated 6.8 years ago by Koen Van den Berge ▴ 180 • written 6.9 years ago by sdvie • 0

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2.2k

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stageR rnaseqDTU DRIMSeq DEXSeq

7.0 years ago d-joester ▴ 20

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1.9k

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limma stageR decideTests

updated 7.0 years ago by Koen Van den Berge ▴ 180 • written 7.0 years ago by maltethodberg ▴ 180

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1.7k

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drimseq rnaseqdtu stager

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by Jack.Hearn • 0

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2.3k

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DEXSeq StageR rnaseqDTU

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by rbenel ▴ 50

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2.7k

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drimseq stageR dtu salmon rna seq

updated 7.5 years ago by Koen Van den Berge ▴ 180 • written 7.5 years ago by fiona.dick91 ▴ 60

9 results • Page 1 of 1

Recent ...

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Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner • 0

You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…

Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k

Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…

Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k

The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…

Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0

Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…

Comment: Ensembl plants at annotationHub? by jwp48 • 0

Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!

Votes

A: Conversion from counts to FPKM

Answer: Incosistencies in buildSNNGraph() function

Answer: Where do the filename come from in the LOLA datasets?

Bioconductor Maintainer Application

A: What is logFC and "B" in methylation analysis ??

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Great Question to fl ▴ 20

Popular Question to Lluís Revilla Sancho ▴ 760