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error in champ.SVD
svd
methylation
champ
updated 2.8 years ago by
shepherl
4.3k • written 2.8 years ago by
Giulia
• 0
0
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0
replies
719
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Distance between columns vs distance between rows and SVD
distance
svd
3.0 years ago
Lenny186
• 0
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2
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2.6k
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Some terms in EPIC Methylation Analysis
ChAMP
SVD
Array
Slide
Sample Plate
updated 7.3 years ago by
Yuan Tian
▴ 290 • written 7.3 years ago by
yuabrahamliu
• 0
4
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5
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3.9k
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SVA and proportion of variance explained
sva
svd
explained variance
pca
updated 9.2 years ago by
Jeff Leek
▴ 650 • written 9.2 years ago by
Mattia
▴ 10
0
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2.6k
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News:
Bug in ChAMP package champ.SVD() function
champ
methylation
450k
SVD
EPIC
News
9.4 years ago
Yuan Tian
▴ 90
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Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
I updated the above answer today.
Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Noted, thank you very much.
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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