Bioconductor Tcga cnv

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TCGA CNV correlation between mRNA exprssion and CNV

updated 8.6 years ago by spulido99 • 0 • written 9.5 years ago by ycding ▴ 10

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cn.mops cnvtools tcga cnv

updated 8.9 years ago by Günter Klambauer ▴ 540 • written 8.9 years ago by vakul.mohanty ▴ 20

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tcga cnv gene symbol coordinate

updated 23 months ago by James W. MacDonald 67k • written 9.4 years ago by NS ▴ 60

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Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20

Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …

Comment: miRTarRnaseq library by María Calvo • 0

Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…

Answer: heatmap with batch effect by James W. MacDonald 67k

You have only one condition in the second batch, so it's not possible to remove the batch effect. You can probably adjust for it somewhat, …

Answer: how do I convert an Ilumn IDREF to a CPG loci by James W. MacDonald 67k

``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame with 865859 rows and 3 columns ch…

Answer: Which input data is acceptable for MAST? by Andrew_McDavid ▴ 270

Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…

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