Bioconductor Tcga cnv

Showing : tcga cnv • reset

27

votes

21

replies

24k

views

tcga cnv gene symbol coordinate

updated 23 months ago by James W. MacDonald 67k • written 9.5 years ago by NS ▴ 60

0

votes

5

replies

8.6k

views

TCGA CNV correlation between mRNA exprssion and CNV

updated 8.6 years ago by spulido99 • 0 • written 9.5 years ago by ycding ▴ 10

0

votes

4

replies

2.1k

views

cn.mops cnvtools tcga cnv

updated 8.9 years ago by Günter Klambauer ▴ 540 • written 8.9 years ago by vakul.mohanty ▴ 20

3 results • Page 1 of 1

Recent ...

Replies

Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA by Bob ▴ 10

Thanks for the prompt answer! I looked into the "original ssGSEA R-implementation" ([https://github.com/GSEA-MSigDB/ssGSEA-gpmodule][1]), u…

Comment: RNASeq Time Course Question by jihoon.kim.1495 ▴ 10

I see. You'd mean clustering using only the right 5 columns (in the above example), right?

Comment: RNASeq Time Course Question by Michael Love 42k

Yes. If you wanted to focus on differences, you could cluster on the subset of coefficients representing differences (interactions).

Comment: RNASeq Time Course Question by jihoon.kim.1495 ▴ 10

Thanks for the clarification. With regards to your last comment about the clustering by the coefficients/log2fold changes, I wanted to cl…

Answer: RNASeq Time Course Question by Michael Love 42k

> I am comparing Wildtype Day7 VS Condition Day 7, or is there a different comparison being made? yes. Remember, from the workflow, we sa…

Votes

C: Vertical line at A=0, nothing else, on MA plot

Comment: RNASeq Time Course Question

Answer: RNASeq Time Course Question

Comment: limma plotMDS - logFC inverted?

Awards • All