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tcga cnv
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how to analyze TCGA CNV data
TCGA CNV
correlation between mRNA exprssion and CNV
updated 8.2 years ago by
spulido99
• 0 • written 9.1 years ago by
ycding
▴ 10
0
votes
4
replies
1.9k
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Using cn.MOPs to estimate CNVs in tumors without reference normal
cn.mops
cnvtools
tcga cnv
updated 8.5 years ago by
Günter Klambauer
▴ 540 • written 8.5 years ago by
vakul.mohanty
▴ 20
27
votes
21
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23k
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Mapping genome regions to gene symbols
tcga cnv
gene symbol
coordinate
updated 17 months ago by
James W. MacDonald
65k • written 9.0 years ago by
NS
▴ 60
3 results • Page
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Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma
by
James W. MacDonald
65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! That is a great tip. cameraRes <- camera(numeric_matrix, geneSets, inter.gene.cor=0.01, design) Error in Stat[iset]…
Votes
Answer: Help with error using camera() in limma
Answer: Help with error using camera() in limma
Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
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