Bioconductor Tcga cnv

Showing : tcga cnv • reset

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cn.mops cnvtools tcga cnv

updated 9.1 years ago by Günter Klambauer ▴ 540 • written 9.1 years ago by vakul.mohanty ▴ 20

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tcga cnv gene symbol coordinate

updated 2.1 years ago by James W. MacDonald 67k • written 9.6 years ago by NS ▴ 60

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TCGA CNV correlation between mRNA exprssion and CNV

updated 8.8 years ago by spulido99 • 0 • written 9.7 years ago by ycding ▴ 10

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Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

Yes, I did. Here is my code. data.path <- "~/GeoMx_best_practice/data/" filepath <- paste(data.path, "Joon_QC_NPC_4_…

Comment: fail to use addPerROIQC in Rmd by shepherl 4.1k

Just covering all bases. You defined spe earlier in the R markdown that is not shown?

Comment: Open Sesame: in what genes are my differentially methylated probes!! by alyssa-daniel • 0

@zhouwanding I have a question regarding DML analysis. I understand the Est_ output is describing the difference in methylation between the…

Comment: DESeq2 dispersion estimates fitting drastically different based on explanatory v by Sam • 0

Here is the explanatory variables![enter image description here][1] uses if that helps address the problem as well [1]: /media/images/…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman My understanding is that both options would still be mixed models: Even with technical replicates (3 wells per d…

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