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tcgautils
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TCGA RNAseq Normalization
normalization
RNASEQ
Normalization
TCGAutils
TCGA
updated 17 months ago by
ATpoint
★ 4.1k • written 17 months ago by
Deniz
• 0
3
votes
4
replies
1.8k
views
Error with R package curatedTCGAData while trying to download TCGA MultiAssayExperiments
MultiAssayExperiment
curatedTCGAData
TCGAutils
3.4 years ago
svlachavas
▴ 830
3
votes
3
replies
1.2k
views
Error in MAE experiment regarding the replacement of internal assays with different number of features
MultiAssayExperiment
curatedTCGAData
TCGAutils
updated 3.4 years ago by
Marcel Ramos
690 • written 3.4 years ago by
svlachavas
▴ 830
3
votes
3
replies
1.3k
views
Implementation of MultiAssayExperiment and curatedTCGAData R packages for quering and prosessing multi-omics cancer datasets
MultiAssayExperiment
curatedTCGAData
TCGAutils
updated 3.4 years ago by
Marcel Ramos
690 • written 3.6 years ago by
svlachavas
▴ 830
5
votes
11
replies
3.9k
views
Matching TCGA Aliquot ID to UUID or Barcode
TCGAutils
TCGAbiolinks
GenomicDataCommons
updated 4.8 years ago by
Marcel Ramos
690 • written 4.8 years ago by
Dario Strbenac
★ 1.5k
0
votes
1
reply
769
views
Breast cancer subtypes in TCGAutils
TCGAutils
updated 5.1 years ago by
Levi Waldron
★ 1.1k • written 5.1 years ago by
vittorio.fortino
• 0
3
votes
4
replies
1.3k
views
TCGAutils: Error in .checkBarcodes(barcodes) : barcode delimiters not consistent
TCGAutils
multiassayexperiment
coad
updated 5.9 years ago by
Marcel Ramos
690 • written 5.9 years ago by
mario.zanfardino
▴ 160
7 results • Page
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Answer: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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