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Easiest way to convert read10xMolInfo data into a dataframe in R with gene labels as row names
tidyverse
R
SingleCellExperiment
SingleCellData
written 21 months ago by
Sitapriya
• 0
0
votes
4
replies
1.6k
views
paired tests with tidybulk and edgeR
edgeR
R
tidyverse
tidybulk
2.8 years ago
Amit Indap
▴ 10
1
vote
3
replies
2.0k
views
Extract specific portion of a string and paste to a new column in R
Rscript
tidyr
dataframe
tidyverse
offtopic
updated 3.1 years ago by
Marcel Ramos
700 • written 3.1 years ago by
Nikhil
• 0
1
vote
5
replies
1.7k
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Tidyverse masking Genefilter after BioConductor update
bioconductor
R
tidyverse
IlluminaHumanMethylationEPICanno.ilm10b4.hg19.
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
jonellevillar
• 0
8
votes
6
replies
2.5k
views
Error when running "locateVariants" function in "VariantAnnotation" package
variantannotation
tidyverse
genomicfeatures
updated 8.0 years ago by
Hervé Pagès
16k • written 8.0 years ago by
yduan004
▴ 20
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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
▴ 200
I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
James W. MacDonald
68k
Not sure I understand. You ask how to do something and then show how one would do so.
Comment: DiffBind getting Fold values of near 0
by
littlefishes20
▴ 10
Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
▴ 200
I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …
Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel
by
James W. MacDonald
68k
Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…
Votes
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
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