Bioconductor Tidyverse

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tidyverse R SingleCellExperiment SingleCellData

written 21 months ago by Sitapriya • 0

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edgeR R tidyverse tidybulk

2.9 years ago • updated 2.8 years ago Amit Indap ▴ 10

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Rscript tidyr dataframe tidyverse offtopic

updated 3.1 years ago by Marcel Ramos 700 • written 3.1 years ago by Nikhil • 0

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bioconductor R tidyverse IlluminaHumanMethylationEPICanno.ilm10b4.hg19.

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by jonellevillar • 0

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variantannotation tidyverse genomicfeatures

updated 8.0 years ago by Hervé Pagès 16k • written 8.1 years ago by yduan004 ▴ 20

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Comment: Visualization of Functional Enrichment Result with enrichplot: How to control la by zhaoqiansun0592 • 0

Wow, this is super helpful! I always struggle with label sizes in enrichplot. Glad to see a solution using gginnards([Pasjans][1]) and ggre…

Comment: Could we detect difference at pathway level but not significant different at gen by zhaoqiansun0592 • 0

Interesting question! It's cool that ChatGPT4 gave such a helpful answer. I've also been wondering if pathways([space waves][1]) can show d…

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by zhaoqiansun0592 • 0

Good to know there are workarounds for these tricky [doodle baseball][1]! Thanks for sharing the tips! [1]: https://doodle-baseball.cc/

Comment: GO.db and others package Download failure by James W. MacDonald 68k

Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…

Comment: GO.db and others package Download failure by James W. MacDonald 68k

Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …