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tidyverse R SingleCellExperiment SingleCellData

written 23 months ago by Sitapriya • 0

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edgeR R tidyverse tidybulk

3.0 years ago Amit Indap ▴ 10

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Rscript tidyr dataframe tidyverse offtopic

updated 3.3 years ago by Marcel Ramos 700 • written 3.3 years ago by Nikhil • 0

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bioconductor R tidyverse IlluminaHumanMethylationEPICanno.ilm10b4.hg19.

updated 7.3 years ago by James W. MacDonald 68k • written 7.3 years ago by jonellevillar • 0

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variantannotation tidyverse genomicfeatures

updated 8.2 years ago by Hervé Pagès 16k • written 8.2 years ago by yduan004 ▴ 20

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Comment: gene Set with high AUC score but no cells assigned to cell type by e.j.aaw.g.erm • 0

It sounds like AUCell is struggling with thresholding because your cDC2 gene set doesn t show a clear bimodal distribution. While a high AU…

Comment: featureCounts -L: high unassigned:mapq fraction by insurancetaaddddaxrealty • 0

FeatureCounts can behave differently with ONT cDNA BAM files due to long read splice patterns, and many users compare settings or presets m…

Comment: A problem occurs when running the monocle2 by e.j.aaw.g.erm • 0

For gamers facing technical issues or errors in complex scripts, the Redz Hub script download provides a reliable tool to optimize performa…

Answer: How can I correctly use phyloseq with Docker? by Kevin Blighe ★ 4.0k

The Bioconductor version must be compatible with the R version. Bioconductor version 3.18 is compatible with R version 4.3. The Dockerfile …

Answer: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by Kevin Blighe ★ 4.0k

Your proposed code is correct and will achieve the desired outcome. The boolean filter expression `IFNg & TNFa | IFNg & IL2 | TNFa & IL2` i…

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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Post translational modifications and phosphoproteomics in limpa?

Answer: Identifying differentially expressed genes in individual samples from a large co

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