Showing : topGO • reset
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topGO quick start guide error
topGO topGO
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 100
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1
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1.8k
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enrichment + topGO
Annotation GO topGO Annotation GO topGO
updated 13.1 years ago by ▴ 750 • written 13.1 years ago by ▴ 20
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2
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1.2k
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topGO: full-length descriptions in graph output
GO topGO GO topGO
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 13k
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1
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1.0k
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FW: Gene list annotation
Annotation GO annotate limma GOstats topGO Annotation GO annotate limma GOstats topGO
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 10
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3
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1.9k
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topGO dependency: Rgrapphviz
GO Rgraphviz topGO GO Rgraphviz topGO
updated 13.4 years ago by ★ 8.2k • written 13.4 years ago by ▴ 20
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1
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4.0k
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problems generating a gene2GOlist in topGO
Genetics Annotation GO hgu95av2 convert biomaRt topGO Genetics Annotation GO hgu95av2
updated 13.6 years ago by ▴ 400 • written 13.6 years ago by ▴ 510
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1
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1.3k
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How to install topGO on R version 2.14.0
topGO topGO
updated 13.7 years ago by 21k • written 13.7 years ago by ★ 13k
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0
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2.5k
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TopGO p-values VS DAVID p-values
Microarray GO Category topGO Microarray GO Category topGO
13.8 years ago Paul Geeleher ★ 1.3k
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2.2k
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topGO error, likely from topDiffGenes method of selection
Microarray topGO Microarray topGO
14.0 years ago oystercow ▴ 20
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1000
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topGO using de novo assembled transcriptome
Microarray topGO Microarray topGO
14.0 years ago oystercow ▴ 20
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0
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1.4k
views
topGO graph visualization functions crashing under R 2.13.2 with Graphviz 2.20.3.1
GO Visualization graph Rgraphviz topGO GO Visualization graph Rgraphviz topGO
14.0 years ago Joseph Skaf ▴ 20
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2
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4.2k
views
Problems creating topGOdata object!
GO topGO GO topGO
updated 14.1 years ago by ★ 6.8k • written 14.1 years ago by ▴ 80
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0
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957
views
LEA graph correction in topGO
GO graph topGO GO graph topGO
14.3 years ago tom carroll ▴ 10
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0
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2.4k
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Visualising the GO structure (RNA-seq) using topGO, and goseq
Microarray GO Visualization graph topGO goseq Microarray GO Visualization graph topGO
14.6 years ago Paolo Sonego ▴ 140
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0
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2.1k
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GO with R and Bioconductor
Transcription Annotation GO GOstats biomaRt topGO GSEABase goseq Transcription Annotation
14.7 years ago Duke ▴ 210
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5
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2.8k
views
GO with R and Bioconductor
Transcription GO GOstats biomaRt topGO goseq Transcription GO GOstats biomaRt topGO
updated 14.7 years ago by 6.7k • written 14.7 years ago by ▴ 210
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4
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1.7k
views
topGO sensitive to the order of "interesting" gene ids
GO topGO GO topGO
updated 14.8 years ago by ▴ 400 • written 14.8 years ago by ▴ 110
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4
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2.1k
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subset ontology from entire GO db using topGO
GO topGO GO topGO
updated 14.8 years ago by ★ 7.2k • written 14.8 years ago by ▴ 20
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0
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1.1k
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subset ontology terms from entire GO db using topGO
GO topGO GO topGO
14.8 years ago Paul Rigor ▴ 110
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1
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1.9k
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extracting topGO gene ids from result object
Annotation GO graph GOstats topGO Annotation GO graph GOstats topGO
updated 14.8 years ago by ▴ 20 • written 14.8 years ago by ▴ 400
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3
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4.4k
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extracting topGO gene ids from result object
Annotation GO topGO Annotation GO topGO
updated 14.9 years ago by ★ 6.8k • written 14.9 years ago by ▴ 110
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0
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912
views
extracting IDs from topGO results object
Annotation GO topGO Annotation GO topGO
14.9 years ago Paul Rigor ▴ 20
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1
reply
3.3k
views
topGO and Arabidopsis data
Annotation GO ath1121501 topGO Annotation GO ath1121501 topGO
updated 14.9 years ago by ▴ 400 • written 14.9 years ago by ▴ 30
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2
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2.5k
views
help in downloading some packages.
goTools sigPathway topGO goTools sigPathway topGO
updated 15.1 years ago by ▴ 550 • written 15.1 years ago by ▴ 100
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1
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1.1k
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topGO in combination with Agilent arrays
GO topGO GO topGO
updated 15.1 years ago by 68k • written 15.2 years ago by ▴ 60
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1
reply
1.9k
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topGO documentation / clarification
Microarray GO topGO Microarray GO topGO
updated 15.2 years ago by ▴ 400 • written 15.2 years ago by ▴ 60
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0
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1.2k
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topGO:what is the good way to work out FDR?
GO topGO GO topGO
15.5 years ago jiayu wen ▴ 60
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0
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1.5k
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mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
Annotation GO Mus musculus PROcess topGO Annotation GO Mus musculus PROcess topGO
15.7 years ago Dick Beyer ★ 1.4k
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1.7k
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mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
GO Mus musculus PROcess topGO GO Mus musculus PROcess topGO
updated 15.7 years ago by 21k • written 15.7 years ago by ★ 1.4k
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0
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1.8k
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topGO results visualisation question
graph topGO graph topGO
15.8 years ago Iain Gallagher ▴ 930
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0
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1.2k
views
GenTable of topGO
topGO topGO
16.1 years ago Vijay Kumar ▴ 40
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4
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2.2k
views
Gene Ontology analysis for non-affy data
GO GOstats topGO GO GOstats topGO
updated 16.1 years ago by ▴ 400 • written 16.1 years ago by ▴ 50
4
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2
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3.2k
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error with display of significant nodes using topGO
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 16.1 years ago by ▴ 400 • written 16.1 years ago by ▴ 340
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0
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1.3k
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How to compare GO results
Annotation GO topGO goProfiles Annotation GO topGO goProfiles
16.2 years ago Johannes Hanson ▴ 30
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2
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1.2k
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How to compare GO results
GO topGO GO topGO
updated 16.2 years ago by ▴ 90 • written 16.2 years ago by ▴ 30
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3
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3.4k
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annFUN.gene2GO in topGO package
topGO topGO
16.2 years ago Leonor Palmeira ▴ 100
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799
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Fwd: Re: which package can do GSEA for no model organism
Annotation GO Organism GOstats topGO ASSIGN Annotation GO Organism GOstats topGO ASSIGN
16.4 years ago Pengcheng Yang ▴ 40
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2
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2.4k
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GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation GO Yeast db0 probe topGO AnnotationDbi Annotation GO Yeast db0 probe topGO
updated 16.4 years ago by ★ 7.2k • written 16.4 years ago by ▴ 20
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3
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1.8k
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question using GSEABase
GO GOstats topGO GSEABase GO GOstats topGO GSEABase
updated 16.5 years ago by 25k • written 16.5 years ago by ▴ 80
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0
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981
views
GOstats Annotation Package
Microarray Annotation GO GOstats topGO AnnotationDbi Microarray Annotation GO GOstats
16.7 years ago Jörg ▴ 40
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1
reply
1.6k
views
GOstats Annotation Package
Microarray Annotation GOstats topGO Microarray Annotation GOstats topGO
updated 16.7 years ago by ▴ 730 • written 16.7 years ago by ▴ 40
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3
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2.9k
views
How to create a GO2gene object for topGO?
GO topGO GO topGO
updated 17.0 years ago by ★ 3.4k • written 17.0 years ago by ▴ 100
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1
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1.7k
views
GOstats-compatible annotation package for Helicobacter pylori 26995
Annotation AnnBuilder GOstats topGO Annotation AnnBuilder GOstats topGO
updated 17.1 years ago by ★ 7.2k • written 17.1 years ago by ▴ 70
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4
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2.5k
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topGO problem
GO cdf affy topGO GO cdf affy topGO
17.1 years ago Iain Gallagher ▴ 930
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2
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2.2k
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TopGO - GenTable parameters
GO topGO GO topGO
17.1 years ago balag Ganesan ▴ 140
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0
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904
views
Post hyperGTest : drawing GO graphs
GO Yeast GOstats topGO GO Yeast GOstats topGO
17.1 years ago balag Ganesan ▴ 140
0
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3
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1.8k
views
topGO question
Annotation GO topGO Annotation GO topGO
updated 17.1 years ago by ▴ 400 • written 17.2 years ago by ▴ 310
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0
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1.8k
views
topGO and font size in the graph plots
graph Rgraphviz topGO graph Rgraphviz topGO
17.2 years ago michael watson IAH-C ★ 3.4k
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1
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2.5k
views
object "annFUN.db" not found in topGO
GO topGO GO topGO
updated 17.2 years ago by ▴ 730 • written 17.2 years ago by ▴ 10
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2
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1.8k
views
Problems loading SparseM
topGO topGO
updated 17.2 years ago by 21k • written 17.2 years ago by ▴ 310
211 results • Page 4 of 5
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Comment: Filtering of RNA-seq data in EdgeR by tbcgpifgatboknjrgq • 0
The command: keep <- aveLogCPM(y) > 0 y <- y[keep, , keep.lib.sizes=FALSE] filters out genes with very low expression levels. Spe…
Comment: "Watched Tags" are being erased rather than updated by dipakosikotes • 0
Possibly a combination: some change in the forum software that affects some accounts/configurations but not all [unblocked games][1] […
Answer: EuroBioC2023 abstract submission is open! by Hao • 0
It's obvious that the blogger hought on details. It is not only easy to read but also makes the content more rich and interesting.[1v1 …
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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