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trackviewer
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reset
4
votes
3
replies
882
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trackviewer gi2track not found
trackv
trackViewer
2.3 years ago
tomas.rodriguez
▴ 10
3
votes
3
replies
908
views
trackViewer assigning track colors
trackViewer
track
updated 2.2 years ago by
Ou, Jianhong
★ 1.3k • written 2.2 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.2k
views
trackViewer peak visualization
trackViewer
2.5 years ago
liruiradiant
• 0
1
vote
8
replies
1.6k
views
trackViewer, the interactive version, can't view negative values in bigWig
trackViewer
updated 4.8 years ago by
Ou, Jianhong
★ 1.3k • written 4.8 years ago by
liruiradiant
• 0
1
vote
3
replies
1.0k
views
trackViewer: how to make lolliplots for methylation data
trackViewer
methylation
lolliplot
4.5 years ago
patriciasolesanchez
• 0
0
votes
2
replies
1.7k
views
trackViewer bigWig smoothing
trackViewer
2.5 years ago
liruiradiant
• 0
0
votes
2
replies
967
views
trackViewer font
trackViewer
2.5 years ago
liruiradiant
• 0
0
votes
1
reply
280
views
Incorrect display of Y-axis
trackViewer
updated 5 months ago by
Ou, Jianhong
★ 1.3k • written 5 months ago by
Bastien
• 0
0
votes
1
reply
980
views
trackviewer lolliplot pie.stack
lolliplot
trackviewer
updated 6.9 years ago by
Ou, Jianhong
★ 1.3k • written 6.9 years ago by
manuel.x.duval
• 0
0
votes
0
replies
469
views
How to use xscale
trackViewer
2.0 years ago
tomas.rodriguez
▴ 10
0
votes
1
reply
964
views
Attempts to create a lolliplot from 1000 genomes .popvcf file using trackViewer generating the error, "Error: all(width(SNP.gr[[i]]) == 1) is not TRU…
bioconductor
R
trackviewer
updated 6.4 years ago by
Ou, Jianhong
★ 1.3k • written 6.4 years ago by
rop.jesse
• 0
0
votes
1
reply
633
views
Can I use trackViewer to generate methylation lolliops with my own gene models and assembly?
trackViewer
updated 4.5 years ago by
Ou, Jianhong
★ 1.3k • written 4.5 years ago by
martinson.john
• 0
0
votes
3
replies
808
views
TrackViewer Vignette Err: attr must be a slot name of xscale object
trackViewer
4.4 years ago
liruiradiant
• 0
0
votes
3
replies
770
views
trackViewer: File format detection
trackViewer
trackview
updated 3.4 years ago by
Ou, Jianhong
★ 1.3k • written 3.4 years ago by
tomas.rodriguez
▴ 10
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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