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treeio
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Treeio as.treedata function seq lenght error
treeio
18 months ago
nromerov
• 0
0
votes
0
replies
1.1k
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How to place jplace Querries from EPA RAxML on the tree as branches in Teeio/ggtree?
treeio
EPA
jplace
RAxML
ggtree
4.7 years ago
Vincent
• 0
0
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3
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3.2k
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How can I read in BEAST nexus tree with treeio and get all node values
treeio
beast
nexus
ips
OutbreakTools
7.0 years ago
sknu003
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0
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1
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2.4k
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How to save changes on a phylogeneitc tree using ggtree and treeio?
ggtree
treeio
7.4 years ago
jdimopoulos21
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0
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1
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2.3k
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tip_glom and annotations?
ggtree
treeio
phyloseq
annotation
tip_glom
updated 7.8 years ago by
Guangchuang Yu
★ 1.2k • written 7.8 years ago by
werdnus
• 0
5 results • Page
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Comment: upstream git branches of bioc-release
by
TrentonCollier99
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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