Bioconductor Varianttools

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VariantTools

updated 2.2 years ago by Vincent J. Carey, Jr. 6.7k • written 2.2 years ago by Imraan • 0

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991

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protein structure determinationh varianttools

updated 7.5 years ago by Hervé Pagès 16k • written 7.5 years ago by amolares • 0

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varianttools gmapr

updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.0 years ago by Johannes Rainer ★ 2.1k

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1.8k

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customprodb dbsnp refseq varianttools

updated 9.4 years ago by xiaojing.wang ▴ 50 • written 9.4 years ago by kristenbeck527 • 0

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9.3k

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ubuntu package installation varianttools

updated 9.5 years ago by James W. MacDonald 67k • written 9.5 years ago by lelemraposo ▴ 10

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VariantTools BiocParallel GenomicAlignments VariantTools BiocParallel GenomicAlignments

updated 10.5 years ago by Martin Morgan 25k • written 10.5 years ago by Guest User ★ 13k

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2.2k

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VariantAnnotation Annotation VariantAnnotation VariantTools VariantAnnotation Annotation

updated 11.0 years ago by Valerie Obenchain ★ 6.8k • written 11.0 years ago by Thomas Girke ★ 1.7k

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1.4k

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VariantTools VariantTools

updated 11.0 years ago by Michael Lawrence ★ 11k • written 11.0 years ago by heyi xiao ▴ 360

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1.6k

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VariantTools VariantTools

updated 11.0 years ago by Michael Lawrence ★ 11k • written 11.0 years ago by heyi xiao ▴ 360

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IRanges GenomicRanges VariantTools XVector IRanges GenomicRanges VariantTools XVector

updated 11.0 years ago by Michael Lawrence ★ 11k • written 11.0 years ago by heyi xiao ▴ 360

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VariantTools VariantTools

updated 11.2 years ago by Dan Tenenbaum ★ 8.2k • written 11.2 years ago by francesca bergantino ▴ 30

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Coverage Cancer cycle VariantTools Coverage Cancer cycle VariantTools

updated 11.3 years ago by Taylor, Sean D ▴ 250 • written 11.3 years ago by Martin Morgan 25k

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VariantTools VariantTools

updated 11.4 years ago by Valerie Obenchain ★ 6.8k • written 11.4 years ago by Taylor, Sean D ▴ 250

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930

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VariantTools VariantTools

updated 11.4 years ago by Michael Lawrence ★ 11k • written 11.4 years ago by Guest User ★ 13k

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Coverage VariantTools ensemblVEP Coverage VariantTools ensemblVEP

updated 11.6 years ago by Valerie Obenchain ★ 6.8k • written 11.6 years ago by Guest User ★ 13k

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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

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A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

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