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vcf
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3
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1.8k
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VariantAnnotation package, subseting vcfs on fixed fields
variantannotation
vcf
fixed
filter
11.1 years ago
Anna N.
• 0
0
votes
1
reply
1.8k
views
readVCF (VariantAnnotation) problem with mismatched header and info fields in vcf file
annotation
vcf
readvcf
variantannotation
11.2 years ago
jls2282
• 0
0
votes
2
replies
1.7k
views
How to correct VCF Iranges from width=1 to correct end coordinate
VCF
iranges
End
software error
variantannotation
11.2 years ago
tiffanie.moss
• 0
0
votes
10
replies
3.9k
views
Incorrect row names when a VCF has multiple ALTs.
variantannotation
vcf
updated 11.2 years ago by
Valerie Obenchain
★ 6.8k • written 11.2 years ago by
bicycle1885
• 0
4
votes
3
replies
2.0k
views
how to save file on local disk after applying predictCoding() function?
vcf
predict coding
save file
VariantAnnotation
updated 11.3 years ago by
Thomas Sandmann
▴ 90 • written 11.3 years ago by
anastasiya-terskih
▴ 10
55 results • Page
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Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error
by
ansley.r.burtch
• 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: limpa analysis advice
by
Gordon Smyth
53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Votes
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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