Bioconductor Vega

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SNP Transcription biomaRt Vega SNP Transcription biomaRt Vega

updated 8.2 years ago by maialiaeb • 0 • written 17.9 years ago by Steffen Durinck ▴ 580

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biomaRt Vega biomaRt Vega

updated 10.7 years ago by Thomas Maurel ▴ 800 • written 10.7 years ago by Iain Gallagher ▴ 930

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Saccharomyces cerevisiae Vega Saccharomyces cerevisiae Vega

10.9 years ago Thomas Maurel ▴ 800

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biomaRt Vega biomaRt Vega

updated 11.2 years ago by Steffen Durinck ▴ 540 • written 11.2 years ago by Michael Love 43k

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Vega Vega

11.8 years ago Edmundo Vega ▴ 10

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GO biomaRt Vega GO biomaRt Vega

updated 12.0 years ago by Steffen Durinck ▴ 540 • written 12.0 years ago by J.H. Brandsma ▴ 20

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Annotation GO Yeast Vega Annotation GO Yeast Vega

13.5 years ago Rhoda Kinsella ▴ 660

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Danio rerio biomaRt Vega Danio rerio biomaRt Vega

13.9 years ago Rhoda Kinsella ▴ 660

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SNP miRNA GUI biomaRt Vega SNP miRNA GUI biomaRt Vega

updated 14.1 years ago by Rhoda Kinsella ▴ 660 • written 14.1 years ago by Neel Aluru ▴ 460

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biomaRt Vega biomaRt Vega

14.6 years ago jorge zamora ▴ 40

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biomaRt Vega biomaRt Vega

14.8 years ago Anthony Ferrari ▴ 110

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SNP biomaRt Vega SNP biomaRt Vega

updated 15.1 years ago by James W. MacDonald 67k • written 15.1 years ago by Cristobal Fresno Rodríguez ▴ 370

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cdf probe Vega cdf probe Vega

15.9 years ago Manhong Dai ▴ 200

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Microarray Cancer cdf biomaRt Vega Microarray Cancer cdf biomaRt Vega

19.1 years ago sdurinck ▴ 40

14 results • Page 1 of 1

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Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by James W. MacDonald 67k

How you analyze your data is up to you. But do note that Subset * Conditions implies that you want to find genes that respond to stimulus d…

Comment: MBDseq analysis using qsea package by kf • 0

Hi Matthias, Happy new year! I wondered if it is possible to retrieve normalized value from each samples? makeTable seems only return beta…

Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Quang • 0

Hi, James. I forgot to mention, but yes, I did run `DESeq2::DESeq()`. So, I ran `DESeq2::DESeqDataSetFromHTSeqCount`, then `DESeq2::DESeq()…

Answer: Why did PCA plots look exactly the same after adjusting for batch covariate in D by ATpoint ★ 4.6k

It's an FAQ in the vignette: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#why-after-vst-are-there-s…

Comment: Deseq2, enrichGO and ensembl ID by James W. MacDonald 67k

I am not sure I understand. You say that a unique Ensembl ID maps to multiple gene symbols. That doesn't mean you have two genes (it's just…

Votes

A: Trajectory analysis for single cell sequencing

Answer: Annotation with org.Hs.eg.db Genome Build 38

Answer: Considerations behind the choice of RNAseq Differential Expression Analysis Tool

A: goana limma- extract list of DE genes and genes in the enriched GO terms?

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