Bioconductor Vega

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SNP Transcription biomaRt Vega SNP Transcription biomaRt Vega

updated 8.4 years ago by maialiaeb • 0 • written 18.1 years ago by Steffen Durinck ▴ 580

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biomaRt Vega biomaRt Vega

updated 10.9 years ago by Thomas Maurel ▴ 800 • written 10.9 years ago by Iain Gallagher ▴ 930

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Saccharomyces cerevisiae Vega Saccharomyces cerevisiae Vega

11.1 years ago Thomas Maurel ▴ 800

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biomaRt Vega biomaRt Vega

updated 11.4 years ago by Steffen Durinck ▴ 540 • written 11.4 years ago by Michael Love 43k

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Vega Vega

12.0 years ago Edmundo Vega ▴ 10

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GO biomaRt Vega GO biomaRt Vega

updated 12.2 years ago by Steffen Durinck ▴ 540 • written 12.2 years ago by J.H. Brandsma ▴ 20

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Annotation GO Yeast Vega Annotation GO Yeast Vega

13.7 years ago Rhoda Kinsella ▴ 660

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Danio rerio biomaRt Vega Danio rerio biomaRt Vega

14.1 years ago Rhoda Kinsella ▴ 660

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SNP miRNA GUI biomaRt Vega SNP miRNA GUI biomaRt Vega

updated 14.3 years ago by Rhoda Kinsella ▴ 660 • written 14.3 years ago by Neel Aluru ▴ 460

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biomaRt Vega biomaRt Vega

14.8 years ago jorge zamora ▴ 40

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biomaRt Vega biomaRt Vega

15.0 years ago Anthony Ferrari ▴ 110

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SNP biomaRt Vega SNP biomaRt Vega

updated 15.3 years ago by James W. MacDonald 68k • written 15.3 years ago by Cristobal Fresno Rodríguez ▴ 370

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cdf probe Vega cdf probe Vega

16.1 years ago Manhong Dai ▴ 200

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Microarray Cancer cdf biomaRt Vega Microarray Cancer cdf biomaRt Vega

19.3 years ago sdurinck ▴ 40

14 results • Page 1 of 1

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Comment: Clarification on GOALL / GO2ALLORFs mapping by DavideSant • 0

Thank you for your answer James. I have to disagree though, at the SGD webpage you posted there is no indication that "GO:0045719 - negati…

Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana by Michael Love 43k

And to add to this: when you put a generic package (e.g. DESeq2) as a tag, it actually emails the maintainer.

Answer: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

TPM is fine, I've also sometimes used TPM with some robust column scaling, e.g.: ``` sf <- DESeq2::estimateSizeFactorsForMatrix(txi$abu…

Comment: Using TPM from tximport of Salmon output for singscore by ATpoint ★ 4.7k

As a comment, TMM does not apply here because the authors say in the article that they recommend gene length bias to be removed, and TMM do…

Comment: Surprising behavior for DEXseq dispersion estimate plot? by Esperan • 0

The absence of correlation with feature lengths and other parameters like adjusted p-values and log fold change values can indicate that th…

Votes

Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with multiple cell types

Answer: Replicates in DESeq2

Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Comment: Identifying potentially associated gene set to drug response using GSVA

Answer: Limma - Complex 2-way multi-level contrast with paired samples

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