Bioconductor Wald

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4.0k

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rnaseq deseq2 lrt wald differential gene expression

updated 2.1 years ago by krushnach80 • 0 • written 6.6 years ago by chrysanthi.taxiarchi12 • 0

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18k

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deseq2 wald

updated 2.5 years ago by Michael Love 41k • written 9.2 years ago by deena ▴ 20

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955

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DESeq2 wald stat

updated 20 months ago by Peter Hickey ▴ 740 • written 20 months ago by eve.olszanowski • 0

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1.9k

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deseq2 LRT WALD

updated 4.7 years ago by Michael Love 41k • written 4.7 years ago by annesoalvarez • 0

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1.0k

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GENESIS zscore wald

updated 4.6 years ago by Stephanie M. Gogarten ▴ 870 • written 4.6 years ago by lassana.a.samarakoon ▴ 10

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708

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deseq2 LRT wald

updated 4.2 years ago by Kevin Blighe ★ 3.9k • written 4.2 years ago by jnaviapelaez ▴ 10

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1.2k

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deseq2 ribosome profiling wald lrt

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by indrik.wijaya ▴ 20

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2.6k

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deseq2 wald lrt genes significance

updated 7.9 years ago by Michael Love 41k • written 7.9 years ago by aziza ▴ 20

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1.5k

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etLRT WALD edgeR DESEq

updated 2.7 years ago by Michael Love 41k • written 2.7 years ago by aiswaryabioinfo • 0

9 results • Page 1 of 1

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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

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