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Question about affy
Yeast affy Yeast affy
updated 22.6 years ago by ★ 2.3k • written 22.6 years ago by ▴ 10
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affy memory size and Windows
Yeast affy Yeast affy
22.7 years ago Virginia Marks ▴ 10
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problem reading yeast data
Microarray Yeast cdf Microarray Yeast cdf
updated 22.8 years ago by ★ 2.3k • written 22.8 years ago by ▴ 10
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yeast annotation?
Annotation Yeast Annotation Yeast
23.3 years ago Anthony Rossini ▴ 530
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2
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affy cel + cdf files content
Yeast cdf probe Yeast cdf probe
23.3 years ago Laurent Gautier ★ 2.3k
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affy cel + cdf files content
Yeast cdf probe Yeast cdf probe
23.3 years ago julien.sylvestre@wotan.ens.fr ▴ 50
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Probe pairs location on chips // ANOVA
Yeast ygs98 probe affy Yeast ygs98 probe affy
updated 23.5 years ago by ▴ 280 • written 23.5 years ago by ▴ 50
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(1) Anova for 12 Affy yeast chips (Yg98) // (2) Problem fitting Li&Wong model with Affy 1.0 :
GO Yeast cdf genefilter affy PROcess GO Yeast cdf genefilter affy PROcess
23.5 years ago julien.sylvestre@wotan.ens.fr ▴ 50
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[julien.sylvestre@wotan.ens.fr: Re: pb using affy // Anova with R]
Microarray Yeast genefilter affy Microarray Yeast genefilter affy
23.5 years ago Laurent Gautier ▴ 150
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pb using affy // Anova with R
Microarray Yeast affy Microarray Yeast affy
23.5 years ago julien.sylvestre@wotan.ens.fr ▴ 50
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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