Showing : yeast • reset
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Help with 'annotation' in GOHyeprGParamsClass
Annotation GO Yeast Category Annotation GO Yeast Category
updated 17.0 years ago by ★ 5.5k • written 17.0 years ago by ▴ 50
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3
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
17.0 years ago Patrick Aboyoun ★ 1.6k
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limma: Combining probe level data prior to fitting
Microarray Preprocessing Regression Yeast probe affy limma Microarray Preprocessing Yeast
17.0 years ago Alex Gutteridge ▴ 650
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901
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Post hyperGTest : drawing GO graphs
GO Yeast GOstats topGO GO Yeast GOstats topGO
17.1 years ago balag Ganesan ▴ 140
0
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1
reply
865
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Affymetrix Yeast Tiling Arrays
Yeast affy Yeast affy
updated 17.1 years ago by ★ 13k • written 17.1 years ago by ▴ 50
0
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0
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1.5k
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Sc03b_MR_v04 CDF package
BiocViews Genetics Yeast cdf probe affy affxparser biocViews oligo pdInfoBuilder Yeast
17.1 years ago Ludo Muller ▴ 50
0
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6
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1.8k
views
Sc03b_MR_v04 CDF package
Genetics Yeast cdf Genetics Yeast cdf
updated 17.2 years ago by 68k • written 17.2 years ago by ▴ 50
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1
reply
1.3k
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limma and duplicate correlation
Yeast Yeast
updated 17.2 years ago by ▴ 910 • written 17.2 years ago by ▴ 160
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4
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1.7k
views
Gostats with Yeast annotation
Annotation GO Yeast GOstats Annotation GO Yeast GOstats
updated 17.3 years ago by ★ 7.2k • written 17.3 years ago by ▴ 650
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1
reply
876
views
GraphAT help?
Yeast GraphAT Yeast GraphAT
updated 17.4 years ago by 6.7k • written 17.4 years ago by ★ 1.1k
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0
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1.1k
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made4, memory issues
Network Clustering Cancer Yeast made4 Network Clustering Cancer Yeast made4
18.0 years ago Aedin Culhane ▴ 510
0
votes
0
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2.0k
views
Median-Interquartile Normalization
Microarray SystemsBiology Annotation GO Preprocessing Clustering Cancer Yeast Organism GO
18.0 years ago McGee, Monnie ▴ 300
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10
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2.1k
views
how to build a GOstats-compatible annotation package for plasmodium falciparum?
Annotation Yeast GOstats Annotation Yeast GOstats
updated 18.0 years ago by ▴ 30 • written 18.0 years ago by ★ 1.1k
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5
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2.0k
views
KEGG & hyperGTest: an example?
Annotation Yeast Organism Annotation Yeast Organism
updated 18.0 years ago by ▴ 150 • written 18.0 years ago by ★ 1.1k
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1
reply
1.1k
views
Microarray data with outliers
Yeast Yeast
updated 18.0 years ago by 21k • written 18.0 years ago by ▴ 70
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2
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1.5k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 18.2 years ago by ★ 7.2k • written 18.2 years ago by ▴ 30
0
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1
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3.9k
views
RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 18.2 years ago by 25k • written 18.2 years ago by ▴ 30
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1
reply
2.1k
views
create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 18.2 years ago by 25k • written 18.2 years ago by ▴ 30
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3
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1.4k
views
trouble using GCRMA
Yeast cdf gcrma Yeast cdf gcrma
updated 18.4 years ago by ▴ 200 • written 18.4 years ago by ▴ 10
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0
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891
views
Yeast Tiling Array BPMAP
Yeast Yeast
18.4 years ago iromashk@student.umass.edu ▴ 30
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0
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736
views
Question about Yeast Microarray
Yeast Yeast
18.4 years ago Ajit Kulkarni ▴ 10
0
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0
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731
views
SemSim GOCount question
GO Yeast GO Yeast
18.6 years ago Ariel Chernomoretz ▴ 170
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0
replies
1.1k
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Differentially Expressed Genes in Time Series with Replications
Yeast cycle Yeast cycle
18.7 years ago peter robinson ▴ 300
0
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1
reply
1.2k
views
GOENTREZID2GO hard-coded in GOstats:makeGOGraph
Annotation GO Network Yeast graph GOstats Annotation GO Network Yeast graph GOstats
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ★ 1.1k
0
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1
reply
1.7k
views
[Bioc-devel] SNPscan -> SNPchip
SNP Annotation Yeast Biobase SNPchip SNP Annotation Yeast Biobase SNPchip
updated 19.0 years ago by ▴ 250 • written 19.0 years ago by ▴ 170
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0
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last call for Boston bioc Training, 13-15 july, content revised
Annotation GO Preprocessing Clustering Yeast probe RSNPper biomaRt Annotation GO Yeast
19.3 years ago Vincent J. Carey, Jr. 6.7k
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2
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1.1k
views
Run GOHyperG on yeast without specifying a chip
Microarray Yeast PROcess Microarray Yeast PROcess
updated 19.3 years ago by 68k • written 19.3 years ago by ▴ 100
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1
reply
1.0k
views
yeast2 LOCUSID environment
Annotation Yeast yeast2 Annotation Yeast yeast2
updated 19.4 years ago by ★ 2.9k • written 19.4 years ago by ▴ 320
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0
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1.6k
views
Bioconductor 1.8 for R 2.3.0 is released!
BiocViews aCGH SNP Microarray Annotation GO Clustering Cancer Yeast cdf probe RMAGEML
19.5 years ago Seth Falcon ★ 7.4k
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0
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1.2k
views
High-Throughput Data Analysis Course Announcement: Cold Spring Harbor Labs - June 14-27
SNP Microarray Proteomics Normalization Classification Cancer CGH Yeast SNP Microarray
19.6 years ago Mark Reimers ▴ 70
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0
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909
views
Problems with mas5calls for ygs98 chips
Yeast probe Yeast probe
19.6 years ago Jarno Tuimala ▴ 140
0
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1
reply
929
views
Unable to get expression-values from cel-files of yeast
Yeast cdf affy Yeast cdf affy
updated 19.6 years ago by 68k • written 19.6 years ago by ▴ 10
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0
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927
views
Fwd: Re: Run GOHyperG without specifying a chip
Annotation Yeast Annotation Yeast
19.7 years ago Mikko Arvas ▴ 90
0
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1
reply
1.3k
views
gocluster error: Ontology MF has no GO terms left. in
Annotation GO Yeast mgug4122a goCluster Annotation GO Yeast mgug4122a goCluster
updated 19.8 years ago by ▴ 60 • written 19.8 years ago by ▴ 30
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2
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1.3k
views
SimpleAffy: problem with Yeast Genome 2.0 Array
Yeast cdf simpleaffy Yeast cdf simpleaffy
updated 20.0 years ago by ★ 2.2k • written 20.0 years ago by ▴ 170
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1
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1.3k
views
Several questions goCluster and GOstats...
Annotation GO Visualization Yeast goCluster Annotation GO Visualization Yeast goCluster
updated 20.2 years ago by ▴ 60 • written 20.2 years ago by ▴ 140
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1
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1.4k
views
simLL method in GOstats to measure distances between yeast genes
Yeast hgu95av2 ygs98 Yeast hgu95av2 ygs98
updated 20.4 years ago by ★ 5.5k • written 20.4 years ago by ▴ 100
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1
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1.3k
views
Cho et al.'s Expression Dataset in Yeast
Yeast cycle Yeast cycle
updated 20.5 years ago by ▴ 60 • written 20.5 years ago by ▴ 20
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3
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1.4k
views
getting closer on YEAST 2.0 annotation...
Annotation GUI Yeast probe Annotation GUI Yeast probe
updated 20.7 years ago by ★ 2.9k • written 20.7 years ago by ▴ 320
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2
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1.8k
views
annaffy: YEAST vs. Affy YEAST_2 annotation
Annotation Yeast probe annaffy AnnBuilder Annotation Yeast probe annaffy AnnBuilder
updated 20.7 years ago by ▴ 220 • written 20.7 years ago by ▴ 320
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2
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1.4k
views
trouble with yeastann function in AnnBuilder
Annotation Yeast probe AnnBuilder safe Annotation Yeast probe AnnBuilder safe
updated 20.7 years ago by ▴ 10 • written 20.7 years ago by ▴ 320
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5
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1.7k
views
affy Yeast 2.0 annotation
Annotation Yeast affy limma AnnBuilder Annotation Yeast affy limma AnnBuilder
updated 20.8 years ago by 6.7k • written 20.8 years ago by ▴ 320
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3
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1.2k
views
Yeast and LocuslinkIDs
GO Yeast GO Yeast
updated 20.8 years ago by 21k • written 20.8 years ago by ▴ 60
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0
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962
views
TAG3 script
Yeast cdf probe affy Yeast cdf probe affy
20.8 years ago Joshi, Nina NIH/NCI ▴ 40
0
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0
replies
757
views
cdf environment for Yeast 2.0 array
Yeast cdf affy Yeast cdf affy
20.9 years ago Jakub Orzechowski Westholm ▴ 40
0
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2
replies
1.1k
views
affy package and segmentation error
Yeast Yeast
updated 21.0 years ago by ▴ 950 • written 21.0 years ago by ▴ 40
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3
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1.5k
views
Error doing Mas5 calculation with Simpleaffy package
Yeast affy simpleaffy Yeast affy simpleaffy
updated 21.4 years ago by ★ 1.1k • written 21.5 years ago by ▴ 50
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0
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1.1k
views
Re: metaData
Annotation GO Yeast probe Annotation GO Yeast probe
21.8 years ago John Zhang ★ 2.9k
0
votes
2
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1.1k
views
index between genes and pathways
Pathways GO Yeast Pathways GO Yeast
updated 21.9 years ago by ★ 5.5k • written 21.9 years ago by ▴ 80
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1
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1.5k
views
Annotating yeast ORFs with GO and KEGG
GO Yeast annotate Category GO Yeast annotate Category
updated 21.9 years ago by ▴ 70 • written 21.9 years ago by ▴ 80
110 results • Page 2 of 3
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
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